GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET7Gv20506200 [ AET7Gv20506200]	7D	160582240	160590501	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET7Gv20506200.13 AET7Gv20506200.13	High	No	234	OG0080437		Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -36.453 AMFE: -0.540 GC content %: 67.521
Atauschii_AET7Gv20506200.21 AET7Gv20506200.21	High	No	807	OG0080438		Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -30.582 AMFE: -0.649 GC content %: 47.088

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).