Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET7Gv20521500 [ AET7Gv20521500] |
7D | 168498289 | 168502780 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET7Gv20521500.1 AET7Gv20521500.1 |
Low | Yes | 3696 | OG0010201 | Get ORF Coding potential... Type: noncoding Potential: -1.147 Folding energies... MFEI: -30.457 AMFE: -0.708 GC content %: 43.047 | |
Atauschii_AET7Gv20521500.2 AET7Gv20521500.2 |
Low | Yes | 1168 | OG0010201 | Get ORF Coding potential... Type: noncoding Potential: -0.830 Folding energies... MFEI: -34.735 AMFE: -0.707 GC content %: 49.144 | |
Atauschii_AET7Gv20521500.3 AET7Gv20521500.3 |
High | No | 313 | OG0010201 | Get ORF Coding potential... Type: noncoding Potential: -1.290 Folding energies... MFEI: -19.776 AMFE: -0.534 GC content %: 37.061 | |
Atauschii_AET7Gv20521500.6 AET7Gv20521500.6 |
Low | No | 451 | OG0010201 | Get ORF Coding potential... Type: noncoding Potential: -0.719 Folding energies... MFEI: -43.060 AMFE: -0.691 GC content %: 62.306 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET7Gv20521500.6 | SwissProt | 2021-04-01 | Q2RQZ4 | 3.2e-10 |
Atauschii_AET7Gv20521500.1 | Rfam | 14.6 | MIR1122 | 3.9e-16 |
Atauschii_AET7Gv20521500.2 | Rfam | 14.6 | MIR1122 | 4.4e-8 |
Atauschii_AET7Gv20521500.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
Atauschii_AET7Gv20521500.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
Atauschii_AET7Gv20521500.2 | SwissProt | 2021-04-01 | Q2RQZ4 | 3.99e-9 |