Atauschii AET7Gv20522100
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20522100 [ AET7Gv20522100] |
7D | 169067783 | 169072931 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20522100.1 AET7Gv20522100.1 |
Low | No | 3823 | OG0002961 | Get ORF Coding potential... Type: noncoding Potential: -0.098 Folding energies... MFEI: -26.941 AMFE: -0.635 GC content %: 42.427 | |
| Atauschii_AET7Gv20522100.10 AET7Gv20522100.10 |
Low | No | 1553 | OG0016746 | Get ORF Coding potential... Type: noncoding Potential: -0.078 Folding energies... MFEI: -27.075 AMFE: -0.605 GC content %: 44.752 | |
| Atauschii_AET7Gv20522100.2 AET7Gv20522100.2 |
Low | No | 3520 | OG0002961 | Get ORF Coding potential... Type: noncoding Potential: -0.141 Folding energies... MFEI: -26.387 AMFE: -0.621 GC content %: 42.500 | |
| Atauschii_AET7Gv20522100.3 AET7Gv20522100.3 |
Low | No | 3365 | OG0002961 | Get ORF Coding potential... Type: noncoding Potential: -0.166 Folding energies... MFEI: -26.846 AMFE: -0.621 GC content %: 43.210 | |
| Atauschii_AET7Gv20522100.4 AET7Gv20522100.4 |
Low | No | 3071 | OG0002961 | Get ORF Coding potential... Type: noncoding Potential: -0.130 Folding energies... MFEI: -28.282 AMFE: -0.649 GC content %: 43.569 | |
| Atauschii_AET7Gv20522100.5 AET7Gv20522100.5 |
Low | No | 220 | OG0002961 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -26.455 AMFE: -0.560 GC content %: 47.273 | |
| Atauschii_AET7Gv20522100.6 AET7Gv20522100.6 |
High | No | 829 | OG0002961 | Get ORF Coding potential... Type: noncoding Potential: -1.259 Folding energies... MFEI: -22.304 AMFE: -0.552 GC content %: 40.410 | |
| Atauschii_AET7Gv20522100.7 AET7Gv20522100.7 |
Low | No | 1911 | OG0002961 | Get ORF Coding potential... Type: noncoding Potential: -0.084 Folding energies... MFEI: -27.804 AMFE: -0.639 GC content %: 43.485 | |
| Atauschii_AET7Gv20522100.8 AET7Gv20522100.8 |
Low | No | 2431 | OG0002961 | Get ORF Coding potential... Type: noncoding Potential: -0.117 Folding energies... MFEI: -26.260 AMFE: -0.611 GC content %: 42.945 | |
| Atauschii_AET7Gv20522100.9 AET7Gv20522100.9 |
Low | No | 319 | OG0016747 | Get ORF Coding potential... Type: noncoding Potential: -0.151 Folding energies... MFEI: -28.809 AMFE: -0.585 GC content %: 49.216 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv20522100.4 | SwissProt | 2021-04-01 | D9HP27 | 2.22e-24 |
| Atauschii_AET7Gv20522100.5 | SwissProt | 2021-04-01 | D9HP27 | 1.14e-6 |
| Atauschii_AET7Gv20522100.1 | SwissProt | 2021-04-01 | D9HP27 | 4.53e-27 |
| Atauschii_AET7Gv20522100.7 | SwissProt | 2021-04-01 | D9HP27 | 7.46e-36 |
| Atauschii_AET7Gv20522100.10 | SwissProt | 2021-04-01 | D9HP27 | 8.23e-36 |
| Atauschii_AET7Gv20522100.8 | SwissProt | 2021-04-01 | D9HP27 | 3.0e-35 |
| Atauschii_AET7Gv20522100.2 | SwissProt | 2021-04-01 | D9HP27 | 2.47e-18 |
| Atauschii_AET7Gv20522100.9 | SwissProt | 2021-04-01 | D9HP27 | 9.83e-29 |
| Atauschii_AET7Gv20522100.3 | SwissProt | 2021-04-01 | D9HP27 | 2.45e-24 |
| Atauschii_AET7Gv20522100.4 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
