GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET7Gv20524800 [ AET7Gv20524800]	7D	170524969	170542788	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET7Gv20524800.4 AET7Gv20524800.4	High	No	207	OG0080474		Get ORF Coding potential... Type: noncoding Potential: -0.879 Folding energies... MFEI: -33.333 AMFE: -0.595 GC content %: 56.039
Atauschii_AET7Gv20524800.5 AET7Gv20524800.5	High	No	204	OG0080475		Get ORF Coding potential... Type: noncoding Potential: -1.093 Folding energies... MFEI: -34.216 AMFE: -0.558 GC content %: 61.275

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).