Atauschii AET7Gv20563600
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20563600 [ AET7Gv20563600] |
7D | 189092149 | 189098769 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20563600.1 AET7Gv20563600.1 |
Low | No | 1039 | OG0001011 | Get ORF Coding potential... Type: noncoding Potential: -0.894 Folding energies... MFEI: -29.240 AMFE: -0.535 GC content %: 54.668 | |
| Atauschii_AET7Gv20563600.10 AET7Gv20563600.10 |
Low | No | 1050 | OG0001011 | Get ORF Coding potential... Type: noncoding Potential: -0.897 Folding energies... MFEI: -34.810 AMFE: -0.646 GC content %: 53.905 | |
| Atauschii_AET7Gv20563600.11 AET7Gv20563600.11 |
High | No | 364 | OG0001011 | Get ORF Coding potential... Type: noncoding Potential: -1.280 Folding energies... MFEI: -23.132 AMFE: -0.624 GC content %: 37.088 | |
| Atauschii_AET7Gv20563600.12 AET7Gv20563600.12 |
High | No | 824 | OG0001011 | Get ORF Coding potential... Type: noncoding Potential: -1.359 Folding energies... MFEI: -29.114 AMFE: -0.668 GC content %: 43.568 | |
| Atauschii_AET7Gv20563600.13 AET7Gv20563600.13 |
High | No | 1673 | OG0001011 | Get ORF Coding potential... Type: noncoding Potential: -1.295 Folding energies... MFEI: -27.334 AMFE: -0.688 GC content %: 39.749 | |
| Atauschii_AET7Gv20563600.14 AET7Gv20563600.14 |
High | No | 979 | OG0001011 | Get ORF Coding potential... Type: noncoding Potential: -1.323 Folding energies... MFEI: -24.934 AMFE: -0.693 GC content %: 35.955 | |
| Atauschii_AET7Gv20563600.2 AET7Gv20563600.2 |
Low | No | 1081 | OG0001011 | Get ORF Coding potential... Type: noncoding Potential: -0.905 Folding energies... MFEI: -28.733 AMFE: -0.527 GC content %: 54.487 | |
| Atauschii_AET7Gv20563600.3 AET7Gv20563600.3 |
Low | No | 3492 | OG0001011 | Get ORF Coding potential... Type: noncoding Potential: -1.118 Folding energies... MFEI: -27.901 AMFE: -0.644 GC content %: 43.356 | |
| Atauschii_AET7Gv20563600.4 AET7Gv20563600.4 |
Low | No | 2783 | OG0001011 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -28.577 AMFE: -0.668 GC content %: 42.760 | |
| Atauschii_AET7Gv20563600.5 AET7Gv20563600.5 |
Low | No | 1600 | OG0001011 | Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -28.975 AMFE: -0.641 GC content %: 45.188 | |
| Atauschii_AET7Gv20563600.6 AET7Gv20563600.6 |
Low | No | 1642 | OG0001011 | Get ORF Coding potential... Type: noncoding Potential: -1.002 Folding energies... MFEI: -28.630 AMFE: -0.632 GC content %: 45.311 | |
| Atauschii_AET7Gv20563600.7 AET7Gv20563600.7 |
Low | No | 907 | OG0001011 | Get ORF Coding potential... Type: noncoding Potential: -0.857 Folding energies... MFEI: -32.073 AMFE: -0.597 GC content %: 53.693 | |
| Atauschii_AET7Gv20563600.8 AET7Gv20563600.8 |
Low | No | 1304 | OG0001011 | Get ORF Coding potential... Type: noncoding Potential: -0.952 Folding energies... MFEI: -32.324 AMFE: -0.647 GC content %: 49.923 | |
| Atauschii_AET7Gv20563600.9 AET7Gv20563600.9 |
Low | No | 917 | OG0001011 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -31.897 AMFE: -0.602 GC content %: 52.999 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv20563600.5 | SwissProt | 2021-04-01 | B8BHF1 | 2.0e-8 |
| Atauschii_AET7Gv20563600.1 | SwissProt | 2021-04-01 | B8BHF1 | 7.53e-9 |
| Atauschii_AET7Gv20563600.6 | SwissProt | 2021-04-01 | B8BHF1 | 3.61e-8 |
| Atauschii_AET7Gv20563600.10 | SwissProt | 2021-04-01 | B8BHF1 | 8.21e-9 |
| Atauschii_AET7Gv20563600.7 | SwissProt | 2021-04-01 | B8BHF1 | 4.9e-9 |
| Atauschii_AET7Gv20563600.2 | SwissProt | 2021-04-01 | B8BHF1 | 1.48e-8 |
| Atauschii_AET7Gv20563600.8 | SwissProt | 2021-04-01 | B8BHF1 | 1.4e-8 |
| Atauschii_AET7Gv20563600.3 | SwissProt | 2021-04-01 | B8BHF1 | 8.21e-8 |
| Atauschii_AET7Gv20563600.9 | SwissProt | 2021-04-01 | B8BHF1 | 8.97e-9 |
| Atauschii_AET7Gv20563600.4 | SwissProt | 2021-04-01 | B8BHF1 | 6.84e-8 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
