Atauschii AET7Gv20564200
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20564200 [ AET7Gv20564200] |
7D | 189320107 | 189323409 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20564200.1 AET7Gv20564200.1 |
High | No | 1519 | OG0003817 | Get ORF Coding potential... Type: noncoding Potential: -0.730 Folding energies... MFEI: -28.381 AMFE: -0.632 GC content %: 44.898 | |
| Atauschii_AET7Gv20564200.13 AET7Gv20564200.13 |
High | No | 466 | OG0026196 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -27.768 AMFE: -0.591 GC content %: 46.996 | |
| Atauschii_AET7Gv20564200.14 AET7Gv20564200.14 |
High | No | 475 | OG0026196 | Get ORF Coding potential... Type: noncoding Potential: -0.862 Folding energies... MFEI: -27.958 AMFE: -0.590 GC content %: 47.368 | |
| Atauschii_AET7Gv20564200.16 AET7Gv20564200.16 |
High | No | 1588 | OG0003817 | Get ORF Coding potential... Type: noncoding Potential: -1.287 Folding energies... MFEI: -25.239 AMFE: -0.687 GC content %: 36.713 | |
| Atauschii_AET7Gv20564200.2 AET7Gv20564200.2 |
High | No | 1684 | OG0003817 | Get ORF Coding potential... Type: noncoding Potential: -0.998 Folding energies... MFEI: -27.684 AMFE: -0.636 GC content %: 43.527 | |
| Atauschii_AET7Gv20564200.3 AET7Gv20564200.3 |
High | No | 1689 | OG0003817 | Get ORF Coding potential... Type: noncoding Potential: -0.882 Folding energies... MFEI: -27.993 AMFE: -0.642 GC content %: 43.576 | |
| Atauschii_AET7Gv20564200.4 AET7Gv20564200.4 |
High | No | 1576 | OG0003817 | Get ORF Coding potential... Type: noncoding Potential: -0.741 Folding energies... MFEI: -27.786 AMFE: -0.634 GC content %: 43.845 | |
| Atauschii_AET7Gv20564200.8 AET7Gv20564200.8 |
High | No | 1491 | OG0003817 | Get ORF Coding potential... Type: noncoding Potential: -0.799 Folding energies... MFEI: -27.881 AMFE: -0.636 GC content %: 43.863 | |
| Atauschii_AET7Gv20564200.9 AET7Gv20564200.9 |
High | No | 2269 | OG0003817 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -27.184 AMFE: -0.660 GC content %: 41.164 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
