Atauschii AET7Gv20576600
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20576600 [ AET7Gv20576600] |
7D | 196145647 | 196150452 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20576600.11 AET7Gv20576600.11 |
High | No | 939 | OG0016754 | Get ORF Coding potential... Type: noncoding Potential: -0.505 Folding energies... MFEI: -24.121 AMFE: -0.599 GC content %: 40.256 | |
| Atauschii_AET7Gv20576600.12 AET7Gv20576600.12 |
High | No | 380 | OG0016754 | Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -20.474 AMFE: -0.608 GC content %: 33.684 | |
| Atauschii_AET7Gv20576600.13 AET7Gv20576600.13 |
High | No | 251 | OG0080579 | Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -18.924 AMFE: -0.505 GC content %: 37.450 | |
| Atauschii_AET7Gv20576600.3 AET7Gv20576600.3 |
High | No | 591 | OG0080580 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -23.773 AMFE: -0.459 GC content %: 51.777 | |
| Atauschii_AET7Gv20576600.9 AET7Gv20576600.9 |
Low | No | 1536 | OG0016754 | Get ORF Coding potential... Type: noncoding Potential: -0.456 Folding energies... MFEI: -25.514 AMFE: -0.629 GC content %: 40.560 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv20576600.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
