Atauschii AET7Gv20581700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20581700 [ AET7Gv20581700] |
7D | 198837051 | 198841316 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20581700.1 AET7Gv20581700.1 |
High | No | 817 | OG0001596 | Get ORF Coding potential... Type: noncoding Potential: -0.888 Folding energies... MFEI: -29.168 AMFE: -0.625 GC content %: 46.634 | |
| Atauschii_AET7Gv20581700.10 AET7Gv20581700.10 |
High | No | 363 | OG0026202 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -24.628 AMFE: -0.577 GC content %: 42.700 | |
| Atauschii_AET7Gv20581700.3 AET7Gv20581700.3 |
High | No | 766 | OG0001596 | Get ORF Coding potential... Type: noncoding Potential: -0.880 Folding energies... MFEI: -27.076 AMFE: -0.628 GC content %: 43.081 | |
| Atauschii_AET7Gv20581700.4 AET7Gv20581700.4 |
High | No | 1062 | OG0001596 | Get ORF Coding potential... Type: noncoding Potential: -1.239 Folding energies... MFEI: -25.659 AMFE: -0.628 GC content %: 40.866 | |
| Atauschii_AET7Gv20581700.5 AET7Gv20581700.5 |
High | No | 774 | OG0001596 | Get ORF Coding potential... Type: noncoding Potential: -0.882 Folding energies... MFEI: -26.395 AMFE: -0.634 GC content %: 41.602 | |
| Atauschii_AET7Gv20581700.6 AET7Gv20581700.6 |
High | No | 742 | OG0001596 | Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -29.245 AMFE: -0.629 GC content %: 46.496 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
