Atauschii AET7Gv20597900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20597900 [ AET7Gv20597900] |
7D | 209015241 | 209018093 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20597900.1 AET7Gv20597900.1 |
Low | Yes | 2008 | OG0002413 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -30.344 AMFE: -0.667 GC content %: 45.468 | |
| Atauschii_AET7Gv20597900.10 AET7Gv20597900.10 |
High | No | 259 | OG0080613 | Get ORF Coding potential... Type: noncoding Potential: -1.094 Folding energies... MFEI: -32.664 AMFE: -0.622 GC content %: 52.510 | |
| Atauschii_AET7Gv20597900.2 AET7Gv20597900.2 |
High | No | 1923 | OG0002413 | Get ORF Coding potential... Type: noncoding Potential: -1.171 Folding energies... MFEI: -28.586 AMFE: -0.631 GC content %: 45.294 | |
| Atauschii_AET7Gv20597900.3 AET7Gv20597900.3 |
High | No | 2054 | OG0002413 | Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -29.094 AMFE: -0.653 GC content %: 44.547 | |
| Atauschii_AET7Gv20597900.4 AET7Gv20597900.4 |
High | No | 1772 | OG0002413 | Get ORF Coding potential... Type: noncoding Potential: -1.240 Folding energies... MFEI: -31.411 AMFE: -0.645 GC content %: 48.702 | |
| Atauschii_AET7Gv20597900.5 AET7Gv20597900.5 |
High | No | 1724 | OG0002413 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -28.660 AMFE: -0.623 GC content %: 45.998 | |
| Atauschii_AET7Gv20597900.6 AET7Gv20597900.6 |
High | No | 1807 | OG0002413 | Get ORF Coding potential... Type: noncoding Potential: -1.168 Folding energies... MFEI: -29.375 AMFE: -0.647 GC content %: 45.434 | |
| Atauschii_AET7Gv20597900.7 AET7Gv20597900.7 |
Low | Yes | 2033 | OG0002413 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -29.272 AMFE: -0.660 GC content %: 44.319 | |
| Atauschii_AET7Gv20597900.8 AET7Gv20597900.8 |
High | No | 1539 | OG0002413 | Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -31.391 AMFE: -0.664 GC content %: 47.303 | |
| Atauschii_AET7Gv20597900.9 AET7Gv20597900.9 |
Low | Yes | 1492 | OG0002413 | Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -28.519 AMFE: -0.704 GC content %: 40.483 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv20597900.7 | Rfam | 14.6 | MIR1122 | 1.3e-9 |
| Atauschii_AET7Gv20597900.9 | Rfam | 14.6 | MIR1122 | 4.7e-7 |
| Atauschii_AET7Gv20597900.1 | Rfam | 14.6 | MIR1122 | 1.3e-9 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
