GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET7Gv20610500 [ AET7Gv20610500]	7D	219868155	219870246	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET7Gv20610500.1 AET7Gv20610500.1	High	No	877	OG0002415		Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -36.169 AMFE: -0.659 GC content %: 54.846
Atauschii_AET7Gv20610500.2 AET7Gv20610500.2	High	No	1117	OG0002415		Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -34.351 AMFE: -0.668 GC content %: 51.388
Atauschii_AET7Gv20610500.3 AET7Gv20610500.3	High	No	289	OG0002415		Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -47.370 AMFE: -0.665 GC content %: 71.280

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).