Atauschii AET7Gv20629000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20629000 [ AET7Gv20629000] |
7D | 234066991 | 234070465 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20629000.1 AET7Gv20629000.1 |
High | No | 2889 | OG0000704 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -28.712 AMFE: -0.666 GC content %: 43.094 | |
| Atauschii_AET7Gv20629000.10 AET7Gv20629000.10 |
High | No | 1892 | OG0000704 | Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -29.360 AMFE: -0.650 GC content %: 45.137 | |
| Atauschii_AET7Gv20629000.11 AET7Gv20629000.11 |
High | No | 2039 | OG0000704 | Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -28.843 AMFE: -0.651 GC content %: 44.286 | |
| Atauschii_AET7Gv20629000.12 AET7Gv20629000.12 |
High | No | 1708 | OG0000704 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -29.180 AMFE: -0.661 GC content %: 44.145 | |
| Atauschii_AET7Gv20629000.13 AET7Gv20629000.13 |
High | No | 1687 | OG0000704 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -29.271 AMFE: -0.661 GC content %: 44.280 | |
| Atauschii_AET7Gv20629000.14 AET7Gv20629000.14 |
High | No | 1564 | OG0000704 | Get ORF Coding potential... Type: noncoding Potential: -0.900 Folding energies... MFEI: -29.789 AMFE: -0.656 GC content %: 45.396 | |
| Atauschii_AET7Gv20629000.15 AET7Gv20629000.15 |
High | No | 1687 | OG0000704 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -29.538 AMFE: -0.659 GC content %: 44.813 | |
| Atauschii_AET7Gv20629000.16 AET7Gv20629000.16 |
High | No | 1373 | OG0000704 | Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -28.288 AMFE: -0.664 GC content %: 42.607 | |
| Atauschii_AET7Gv20629000.17 AET7Gv20629000.17 |
High | No | 2147 | OG0000704 | Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -25.524 AMFE: -0.653 GC content %: 39.078 | |
| Atauschii_AET7Gv20629000.2 AET7Gv20629000.2 |
High | No | 1612 | OG0000704 | Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -29.653 AMFE: -0.657 GC content %: 45.161 | |
| Atauschii_AET7Gv20629000.3 AET7Gv20629000.3 |
High | No | 1494 | OG0000704 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -30.529 AMFE: -0.660 GC content %: 46.252 | |
| Atauschii_AET7Gv20629000.4 AET7Gv20629000.4 |
High | No | 1539 | OG0000704 | Get ORF Coding potential... Type: noncoding Potential: -0.755 Folding energies... MFEI: -29.493 AMFE: -0.651 GC content %: 45.289 | |
| Atauschii_AET7Gv20629000.5 AET7Gv20629000.5 |
High | No | 2996 | OG0000704 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -28.518 AMFE: -0.669 GC content %: 42.623 | |
| Atauschii_AET7Gv20629000.6 AET7Gv20629000.6 |
High | No | 2071 | OG0000704 | Get ORF Coding potential... Type: noncoding Potential: -0.978 Folding energies... MFEI: -29.029 AMFE: -0.654 GC content %: 44.375 | |
| Atauschii_AET7Gv20629000.7 AET7Gv20629000.7 |
High | No | 2087 | OG0000704 | Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -29.229 AMFE: -0.654 GC content %: 44.705 | |
| Atauschii_AET7Gv20629000.8 AET7Gv20629000.8 |
High | No | 1239 | OG0000704 | Get ORF Coding potential... Type: noncoding Potential: -0.932 Folding energies... MFEI: -31.711 AMFE: -0.656 GC content %: 48.345 | |
| Atauschii_AET7Gv20629000.9 AET7Gv20629000.9 |
High | No | 2009 | OG0000704 | Get ORF Coding potential... Type: noncoding Potential: -0.984 Folding energies... MFEI: -29.726 AMFE: -0.675 GC content %: 44.052 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
