Atauschii AET7Gv20649000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20649000 [ AET7Gv20649000] |
7D | 249480000 | 249495842 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20649000.1 AET7Gv20649000.1 |
Low | No | 2028 | OG0001597 | Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -26.425 AMFE: -0.608 GC content %: 43.442 | |
| Atauschii_AET7Gv20649000.10 AET7Gv20649000.10 |
Low | No | 952 | OG0001597 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -33.246 AMFE: -0.643 GC content %: 51.681 | |
| Atauschii_AET7Gv20649000.13 AET7Gv20649000.13 |
Low | No | 444 | OG0001597 | Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -26.284 AMFE: -0.505 GC content %: 52.027 | |
| Atauschii_AET7Gv20649000.19 AET7Gv20649000.19 |
Low | No | 7297 | OG0016766 | Get ORF Coding potential... Type: noncoding Potential: -0.163 Folding energies... MFEI: -26.748 AMFE: -0.676 GC content %: 39.564 | |
| Atauschii_AET7Gv20649000.2 AET7Gv20649000.2 |
High | No | 3258 | OG0001597 | Get ORF Coding potential... Type: noncoding Potential: -0.993 Folding energies... MFEI: -24.451 AMFE: -0.638 GC content %: 38.306 | |
| Atauschii_AET7Gv20649000.3 AET7Gv20649000.3 |
Low | No | 1762 | OG0001597 | Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -27.928 AMFE: -0.628 GC content %: 44.495 | |
| Atauschii_AET7Gv20649000.4 AET7Gv20649000.4 |
Low | No | 1124 | OG0001597 | Get ORF Coding potential... Type: noncoding Potential: -1.251 Folding energies... MFEI: -30.730 AMFE: -0.607 GC content %: 50.623 | |
| Atauschii_AET7Gv20649000.5 AET7Gv20649000.5 |
Low | No | 903 | OG0001597 | Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -34.740 AMFE: -0.647 GC content %: 53.710 | |
| Atauschii_AET7Gv20649000.6 AET7Gv20649000.6 |
High | No | 493 | OG0001597 | Get ORF Coding potential... Type: noncoding Potential: -1.092 Folding energies... MFEI: -40.162 AMFE: -0.712 GC content %: 56.389 | |
| Atauschii_AET7Gv20649000.7 AET7Gv20649000.7 |
Low | No | 1061 | OG0001597 | Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -29.802 AMFE: -0.591 GC content %: 50.424 | |
| Atauschii_AET7Gv20649000.72 AET7Gv20649000.72 |
Low | No | 1239 | OG0016766 | Get ORF Coding potential... Type: noncoding Potential: -0.698 Folding energies... MFEI: -36.166 AMFE: -0.706 GC content %: 51.251 | |
| Atauschii_AET7Gv20649000.73 AET7Gv20649000.73 |
Low | No | 1138 | OG0016766 | Get ORF Coding potential... Type: noncoding Potential: -0.680 Folding energies... MFEI: -36.406 AMFE: -0.696 GC content %: 52.285 | |
| Atauschii_AET7Gv20649000.8 AET7Gv20649000.8 |
Low | No | 1048 | OG0001597 | Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -29.771 AMFE: -0.589 GC content %: 50.573 | |
| Atauschii_AET7Gv20649000.9 AET7Gv20649000.9 |
Low | No | 2086 | OG0001597 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -26.438 AMFE: -0.609 GC content %: 43.384 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv20649000.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET7Gv20649000.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET7Gv20649000.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET7Gv20649000.13 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET7Gv20649000.19 | SwissProt | 2021-04-01 | Q6H8D6 | 3.47e-16 |
| Atauschii_AET7Gv20649000.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET7Gv20649000.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET7Gv20649000.72 | SwissProt | 2021-04-01 | Q5Z5A8 | 2.18e-6 |
| Atauschii_AET7Gv20649000.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET7Gv20649000.73 | SwissProt | 2021-04-01 | Q5Z5A8 | 1.85e-6 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
