GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET7Gv20678600 [ AET7Gv20678600]	7D	272719456	272727404	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET7Gv20678600.12 AET7Gv20678600.12	Low	No	313	OG0080762		Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -23.930 AMFE: -0.594 GC content %: 40.256
Atauschii_AET7Gv20678600.3 AET7Gv20678600.3	High	No	251	OG0080763		Get ORF Coding potential... Type: noncoding Potential: -0.906 Folding energies... MFEI: -27.490 AMFE: -0.437 GC content %: 62.948
Atauschii_AET7Gv20678600.4 AET7Gv20678600.4	High	No	394	OG0080764		Get ORF Coding potential... Type: noncoding Potential: -1.045 Folding energies... MFEI: -31.904 AMFE: -0.569 GC content %: 56.091
Atauschii_AET7Gv20678600.9 AET7Gv20678600.9	High	No	549	OG0080765		Get ORF Coding potential... Type: noncoding Potential: -0.487 Folding energies... MFEI: -27.049 AMFE: -0.660 GC content %: 40.984

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET7Gv20678600.12	SwissProt	2021-04-01	O64642	2.36e-6

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).