Atauschii AET7Gv20681200
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20681200 [ AET7Gv20681200] |
7D | 274217191 | 274267965 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20681200.1 AET7Gv20681200.1 |
Low | No | 1316 | OG0002963 | Get ORF Coding potential... Type: noncoding Potential: -0.163 Folding energies... MFEI: -37.325 AMFE: -0.686 GC content %: 54.407 | |
| Atauschii_AET7Gv20681200.13 AET7Gv20681200.13 |
Low | No | 681 | OG0080766 | Get ORF Coding potential... Type: noncoding Potential: -0.188 Folding energies... MFEI: -41.645 AMFE: -0.674 GC content %: 61.821 | |
| Atauschii_AET7Gv20681200.14 AET7Gv20681200.14 |
Low | No | 933 | OG0002963 | Get ORF Coding potential... Type: noncoding Potential: -0.076 Folding energies... MFEI: -35.927 AMFE: -0.666 GC content %: 53.912 | |
| Atauschii_AET7Gv20681200.15 AET7Gv20681200.15 |
Low | No | 881 | OG0002963 | Get ORF Coding potential... Type: noncoding Potential: -0.060 Folding energies... MFEI: -36.754 AMFE: -0.673 GC content %: 54.597 | |
| Atauschii_AET7Gv20681200.2 AET7Gv20681200.2 |
Low | No | 2091 | OG0002963 | Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -33.271 AMFE: -0.645 GC content %: 51.554 | |
| Atauschii_AET7Gv20681200.3 AET7Gv20681200.3 |
Low | No | 1022 | OG0002963 | Get ORF Coding potential... Type: noncoding Potential: -0.626 Folding energies... MFEI: -39.775 AMFE: -0.690 GC content %: 57.632 | |
| Atauschii_AET7Gv20681200.5 AET7Gv20681200.5 |
Low | No | 1501 | OG0002963 | Get ORF Coding potential... Type: noncoding Potential: -0.203 Folding energies... MFEI: -39.047 AMFE: -0.682 GC content %: 57.229 | |
| Atauschii_AET7Gv20681200.7 AET7Gv20681200.7 |
Low | No | 1226 | OG0002963 | Get ORF Coding potential... Type: noncoding Potential: -0.131 Folding energies... MFEI: -34.608 AMFE: -0.630 GC content %: 54.976 | |
| Atauschii_AET7Gv20681200.8 AET7Gv20681200.8 |
Low | No | 1132 | OG0002963 | Get ORF Coding potential... Type: noncoding Potential: -0.998 Folding energies... MFEI: -34.055 AMFE: -0.607 GC content %: 56.095 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv20681200.13 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET7Gv20681200.3 | SwissProt | 2021-04-01 | Q53FA7 | 1.42e-9 |
| Atauschii_AET7Gv20681200.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET7Gv20681200.5 | SwissProt | 2021-04-01 | Q53FA7 | 2.89e-13 |
| Atauschii_AET7Gv20681200.1 | SwissProt | 2021-04-01 | Q53FA7 | 2.35e-13 |
| Atauschii_AET7Gv20681200.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET7Gv20681200.7 | SwissProt | 2021-04-01 | Q53FA7 | 2.15e-13 |
| Atauschii_AET7Gv20681200.13 | SwissProt | 2021-04-01 | Q53FA7 | 4.12e-13 |
| Atauschii_AET7Gv20681200.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET7Gv20681200.8 | SwissProt | 2021-04-01 | Q53FA7 | 2.24e-9 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
