Atauschii AET7Gv20688300
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20688300 [ AET7Gv20688300] |
7D | 279871331 | 279882012 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20688300.1 AET7Gv20688300.1 |
High | No | 1637 | OG0002416 | Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -18.992 AMFE: -0.535 GC content %: 35.492 | |
| Atauschii_AET7Gv20688300.14 AET7Gv20688300.14 |
High | No | 2704 | OG0002416 | Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -19.898 AMFE: -0.563 GC content %: 35.355 | |
| Atauschii_AET7Gv20688300.2 AET7Gv20688300.2 |
High | No | 2066 | OG0002416 | Get ORF Coding potential... Type: noncoding Potential: -0.816 Folding energies... MFEI: -20.649 AMFE: -0.555 GC content %: 37.222 | |
| Atauschii_AET7Gv20688300.25 AET7Gv20688300.25 |
High | No | 1694 | OG0002416 | Get ORF Coding potential... Type: noncoding Potential: -0.941 Folding energies... MFEI: -19.126 AMFE: -0.536 GC content %: 35.714 | |
| Atauschii_AET7Gv20688300.58 AET7Gv20688300.58 |
High | No | 1539 | OG0002416 | Get ORF Coding potential... Type: noncoding Potential: -0.865 Folding energies... MFEI: -20.487 AMFE: -0.562 GC content %: 36.452 | |
| Atauschii_AET7Gv20688300.59 AET7Gv20688300.59 |
High | No | 1359 | OG0002416 | Get ORF Coding potential... Type: noncoding Potential: -0.842 Folding energies... MFEI: -19.993 AMFE: -0.539 GC content %: 37.086 | |
| Atauschii_AET7Gv20688300.6 AET7Gv20688300.6 |
High | No | 2240 | OG0002416 | Get ORF Coding potential... Type: noncoding Potential: -0.974 Folding energies... MFEI: -19.094 AMFE: -0.552 GC content %: 34.598 | |
| Atauschii_AET7Gv20688300.64 AET7Gv20688300.64 |
High | No | 873 | OG0002416 | Get ORF Coding potential... Type: noncoding Potential: -0.651 Folding energies... MFEI: -19.152 AMFE: -0.521 GC content %: 36.770 | |
| Atauschii_AET7Gv20688300.72 AET7Gv20688300.72 |
Low | No | 1753 | OG0002416 | Get ORF Coding potential... Type: noncoding Potential: -0.886 Folding energies... MFEI: -21.660 AMFE: -0.564 GC content %: 38.391 | |
| Atauschii_AET7Gv20688300.79 AET7Gv20688300.79 |
High | No | 551 | OG0080773 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -23.956 AMFE: -0.516 GC content %: 46.461 | |
| Atauschii_AET7Gv20688300.80 AET7Gv20688300.80 |
Low | No | 978 | OG0080774 | Get ORF Coding potential... Type: noncoding Potential: -0.348 Folding energies... MFEI: -24.243 AMFE: -0.639 GC content %: 37.935 | |
| Atauschii_AET7Gv20688300.81 AET7Gv20688300.81 |
Low | No | 490 | OG0080775 | Get ORF Coding potential... Type: noncoding Potential: -0.839 Folding energies... MFEI: -24.612 AMFE: -0.612 GC content %: 40.204 | |
| Atauschii_AET7Gv20688300.82 AET7Gv20688300.82 |
Low | No | 769 | OG0080776 | Get ORF Coding potential... Type: noncoding Potential: -0.923 Folding energies... MFEI: -24.330 AMFE: -0.592 GC content %: 41.092 | |
| Atauschii_AET7Gv20688300.84 AET7Gv20688300.84 |
Low | No | 461 | OG0080777 | Get ORF Coding potential... Type: noncoding Potential: -0.555 Folding energies... MFEI: -25.206 AMFE: -0.628 GC content %: 40.130 | |
| Atauschii_AET7Gv20688300.88 AET7Gv20688300.88 |
High | No | 312 | OG0080778 | Get ORF Coding potential... Type: noncoding Potential: -1.142 Folding energies... MFEI: -18.077 AMFE: -0.522 GC content %: 34.615 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv20688300.81 | SwissProt | 2021-04-01 | Q381V6 | 1.64e-6 |
| Atauschii_AET7Gv20688300.80 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET7Gv20688300.81 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET7Gv20688300.82 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET7Gv20688300.72 | SwissProt | 2021-04-01 | Q92372 | 5.36e-4 |
| Atauschii_AET7Gv20688300.84 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET7Gv20688300.80 | SwissProt | 2021-04-01 | Q7ZV90 | 1.19e-13 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
