Atauschii AET7Gv20697800
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20697800 [ AET7Gv20697800] |
7D | 296863229 | 296873406 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20697800.10 AET7Gv20697800.10 |
Low | No | 4863 | OG0003723 | Get ORF Coding potential... Type: noncoding Potential: -1.274 Folding energies... MFEI: -28.007 AMFE: -0.654 GC content %: 42.834 | |
| Atauschii_AET7Gv20697800.14 AET7Gv20697800.14 |
Low | No | 4057 | OG0007106 | Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -28.183 AMFE: -0.648 GC content %: 43.480 | |
| Atauschii_AET7Gv20697800.2 AET7Gv20697800.2 |
Low | No | 719 | OG0007106 | Get ORF Coding potential... Type: noncoding Potential: -0.889 Folding energies... MFEI: -25.341 AMFE: -0.588 GC content %: 43.115 | |
| Atauschii_AET7Gv20697800.4 AET7Gv20697800.4 |
Low | No | 716 | OG0007106 | Get ORF Coding potential... Type: noncoding Potential: -0.970 Folding energies... MFEI: -26.006 AMFE: -0.638 GC content %: 40.782 | |
| Atauschii_AET7Gv20697800.5 AET7Gv20697800.5 |
Low | No | 785 | OG0007106 | Get ORF Coding potential... Type: noncoding Potential: -0.965 Folding energies... MFEI: -26.344 AMFE: -0.648 GC content %: 40.637 | |
| Atauschii_AET7Gv20697800.6 AET7Gv20697800.6 |
Low | No | 408 | OG0007106 | Get ORF Coding potential... Type: noncoding Potential: -0.781 Folding energies... MFEI: -26.152 AMFE: -0.610 GC content %: 42.892 | |
| Atauschii_AET7Gv20697800.8 AET7Gv20697800.8 |
Low | No | 678 | OG0003723 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -35.870 AMFE: -0.659 GC content %: 54.425 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv20697800.2 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET7Gv20697800.4 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET7Gv20697800.5 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET7Gv20697800.2 | SwissProt | 2021-04-01 | Q38CE9 | 1.66e-5 |
| Atauschii_AET7Gv20697800.6 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET7Gv20697800.10 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET7Gv20697800.8 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET7Gv20697800.14 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
