Atauschii AET7Gv20698800
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20698800 [ AET7Gv20698800] |
7D | 297735419 | 297742056 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20698800.1 AET7Gv20698800.1 |
High | No | 761 | OG0002419 | Get ORF Coding potential... Type: noncoding Potential: -1.235 Folding energies... MFEI: -31.827 AMFE: -0.595 GC content %: 53.482 | |
| Atauschii_AET7Gv20698800.2 AET7Gv20698800.2 |
High | No | 885 | OG0002419 | Get ORF Coding potential... Type: noncoding Potential: -1.334 Folding energies... MFEI: -33.424 AMFE: -0.616 GC content %: 54.237 | |
| Atauschii_AET7Gv20698800.3 AET7Gv20698800.3 |
High | No | 1317 | OG0002419 | Get ORF Coding potential... Type: noncoding Potential: -1.161 Folding energies... MFEI: -26.759 AMFE: -0.591 GC content %: 45.254 | |
| Atauschii_AET7Gv20698800.4 AET7Gv20698800.4 |
High | No | 1236 | OG0002419 | Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -27.291 AMFE: -0.590 GC content %: 46.278 | |
| Atauschii_AET7Gv20698800.5 AET7Gv20698800.5 |
High | No | 491 | OG0002419 | Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -20.835 AMFE: -0.568 GC content %: 36.660 | |
| Atauschii_AET7Gv20698800.6 AET7Gv20698800.6 |
Low | No | 2643 | OG0002419 | Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -20.284 AMFE: -0.571 GC content %: 35.528 | |
| Atauschii_AET7Gv20698800.7 AET7Gv20698800.7 |
High | No | 1219 | OG0002419 | Get ORF Coding potential... Type: noncoding Potential: -1.212 Folding energies... MFEI: -19.746 AMFE: -0.546 GC content %: 36.177 | |
| Atauschii_AET7Gv20698800.8 AET7Gv20698800.8 |
High | No | 936 | OG0002419 | Get ORF Coding potential... Type: noncoding Potential: -1.339 Folding energies... MFEI: -24.455 AMFE: -0.572 GC content %: 42.735 | |
| Atauschii_AET7Gv20698800.9 AET7Gv20698800.9 |
High | No | 495 | OG0002419 | Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -21.131 AMFE: -0.489 GC content %: 43.232 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv20698800.6 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
