Atauschii AET7Gv20729500
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20729500 [ AET7Gv20729500] |
7D | 341068174 | 341072021 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20729500.1 AET7Gv20729500.1 |
Low | No | 2821 | OG0001933 | Get ORF Coding potential... Type: noncoding Potential: -0.146 Folding energies... MFEI: -27.820 AMFE: -0.626 GC content %: 44.452 | |
| Atauschii_AET7Gv20729500.11 AET7Gv20729500.11 |
Low | No | 558 | OG0001933 | Get ORF Coding potential... Type: noncoding Potential: -0.787 Folding energies... MFEI: -37.151 AMFE: -0.619 GC content %: 60.036 | |
| Atauschii_AET7Gv20729500.12 AET7Gv20729500.12 |
Low | No | 2626 | OG0001933 | Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -26.874 AMFE: -0.644 GC content %: 41.736 | |
| Atauschii_AET7Gv20729500.13 AET7Gv20729500.13 |
Low | No | 743 | OG0001933 | Get ORF Coding potential... Type: noncoding Potential: -0.615 Folding energies... MFEI: -34.415 AMFE: -0.631 GC content %: 54.509 | |
| Atauschii_AET7Gv20729500.14 AET7Gv20729500.14 |
Low | No | 2535 | OG0001933 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -26.264 AMFE: -0.645 GC content %: 40.750 | |
| Atauschii_AET7Gv20729500.15 AET7Gv20729500.15 |
Low | No | 2466 | OG0001933 | Get ORF Coding potential... Type: noncoding Potential: -1.068 Folding energies... MFEI: -23.569 AMFE: -0.657 GC content %: 35.888 | |
| Atauschii_AET7Gv20729500.3 AET7Gv20729500.3 |
Low | No | 3054 | OG0001933 | Get ORF Coding potential... Type: noncoding Potential: -1.002 Folding energies... MFEI: -28.009 AMFE: -0.639 GC content %: 43.811 | |
| Atauschii_AET7Gv20729500.5 AET7Gv20729500.5 |
Low | No | 2722 | OG0001933 | Get ORF Coding potential... Type: noncoding Potential: -0.093 Folding energies... MFEI: -27.623 AMFE: -0.627 GC content %: 44.085 | |
| Atauschii_AET7Gv20729500.7 AET7Gv20729500.7 |
High | No | 1041 | OG0001933 | Get ORF Coding potential... Type: noncoding Potential: -0.884 Folding energies... MFEI: -35.524 AMFE: -0.634 GC content %: 56.004 | |
| Atauschii_AET7Gv20729500.8 AET7Gv20729500.8 |
Low | No | 2927 | OG0001933 | Get ORF Coding potential... Type: noncoding Potential: -0.953 Folding energies... MFEI: -27.578 AMFE: -0.645 GC content %: 42.740 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv20729500.13 | SwissProt | 2021-04-01 | A0A0B6 | 6.58e-8 |
| Atauschii_AET7Gv20729500.14 | SwissProt | 2021-04-01 | A0A0B6 | 1.29e-8 |
| Atauschii_AET7Gv20729500.15 | SwissProt | 2021-04-01 | A0A0B6 | 1.35e-8 |
| Atauschii_AET7Gv20729500.1 | SwissProt | 2021-04-01 | Q500U8 | 3.28e-12 |
| Atauschii_AET7Gv20729500.3 | SwissProt | 2021-04-01 | A0A0B6 | 1.64e-8 |
| Atauschii_AET7Gv20729500.11 | SwissProt | 2021-04-01 | Q6K9A2 | 1.81e-5 |
| Atauschii_AET7Gv20729500.5 | SwissProt | 2021-04-01 | Q500U8 | 7.98e-14 |
| Atauschii_AET7Gv20729500.12 | SwissProt | 2021-04-01 | A0A0B6 | 1.36e-8 |
| Atauschii_AET7Gv20729500.8 | SwissProt | 2021-04-01 | A0A0B6 | 1.56e-8 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
