Atauschii AET7Gv20756400
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20756400 [ AET7Gv20756400] |
7D | 377152601 | 377174751 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20756400.13 AET7Gv20756400.13 |
Low | No | 1228 | OG0004844 | Get ORF Coding potential... Type: noncoding Potential: -0.085 Folding energies... MFEI: -28.673 AMFE: -0.594 GC content %: 48.290 | |
| Atauschii_AET7Gv20756400.21 AET7Gv20756400.21 |
Low | No | 530 | OG0004844 | Get ORF Coding potential... Type: noncoding Potential: -0.038 Folding energies... MFEI: -27.642 AMFE: -0.629 GC content %: 43.962 | |
| Atauschii_AET7Gv20756400.32 AET7Gv20756400.32 |
Low | No | 1126 | OG0004844 | Get ORF Coding potential... Type: noncoding Potential: -0.164 Folding energies... MFEI: -28.321 AMFE: -0.598 GC content %: 47.336 | |
| Atauschii_AET7Gv20756400.33 AET7Gv20756400.33 |
High | No | 408 | OG0080880 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -20.196 AMFE: -0.460 GC content %: 43.873 | |
| Atauschii_AET7Gv20756400.6 AET7Gv20756400.6 |
Low | No | 1804 | OG0004844 | Get ORF Coding potential... Type: noncoding Potential: -0.228 Folding energies... MFEI: -31.275 AMFE: -0.646 GC content %: 48.448 | |
| Atauschii_AET7Gv20756400.8 AET7Gv20756400.8 |
Low | No | 1434 | OG0004844 | Get ORF Coding potential... Type: noncoding Potential: -0.095 Folding energies... MFEI: -29.107 AMFE: -0.607 GC content %: 47.978 | |
| Atauschii_AET7Gv20756400.9 AET7Gv20756400.9 |
Low | No | 1431 | OG0004844 | Get ORF Coding potential... Type: noncoding Potential: -0.124 Folding energies... MFEI: -28.952 AMFE: -0.604 GC content %: 47.939 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv20756400.9 | SwissProt | 2021-04-01 | Q9LJX0 | 5.9e-20 |
| Atauschii_AET7Gv20756400.13 | SwissProt | 2021-04-01 | Q9LJX0 | 2.31e-18 |
| Atauschii_AET7Gv20756400.13 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET7Gv20756400.21 | SwissProt | 2021-04-01 | Q9LJX0 | 1.53e-22 |
| Atauschii_AET7Gv20756400.32 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET7Gv20756400.32 | SwissProt | 2021-04-01 | Q9LJX0 | 1.01e-20 |
| Atauschii_AET7Gv20756400.6 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET7Gv20756400.6 | SwissProt | 2021-04-01 | Q9LJX0 | 9.35e-20 |
| Atauschii_AET7Gv20756400.8 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET7Gv20756400.8 | SwissProt | 2021-04-01 | Q9LJX0 | 5.96e-20 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
