Atauschii AET7Gv20757400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20757400 [ AET7Gv20757400] |
7D | 377877840 | 377883325 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20757400.1 AET7Gv20757400.1 |
Low | No | 2212 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -0.781 Folding energies... MFEI: -27.672 AMFE: -0.640 GC content %: 43.219 | |
| Atauschii_AET7Gv20757400.10 AET7Gv20757400.10 |
Low | No | 5471 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -0.855 Folding energies... MFEI: -25.948 AMFE: -0.647 GC content %: 40.102 | |
| Atauschii_AET7Gv20757400.11 AET7Gv20757400.11 |
Low | No | 2295 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -0.806 Folding energies... MFEI: -28.301 AMFE: -0.639 GC content %: 44.314 | |
| Atauschii_AET7Gv20757400.12 AET7Gv20757400.12 |
Low | No | 2614 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -0.822 Folding energies... MFEI: -27.150 AMFE: -0.641 GC content %: 42.387 | |
| Atauschii_AET7Gv20757400.13 AET7Gv20757400.13 |
Low | No | 2559 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -0.796 Folding energies... MFEI: -26.971 AMFE: -0.637 GC content %: 42.360 | |
| Atauschii_AET7Gv20757400.14 AET7Gv20757400.14 |
Low | No | 1405 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -1.109 Folding energies... MFEI: -28.619 AMFE: -0.639 GC content %: 44.769 | |
| Atauschii_AET7Gv20757400.15 AET7Gv20757400.15 |
Low | No | 3492 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -0.825 Folding energies... MFEI: -27.302 AMFE: -0.645 GC content %: 42.354 | |
| Atauschii_AET7Gv20757400.17 AET7Gv20757400.17 |
Low | No | 2186 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -0.779 Folding energies... MFEI: -28.801 AMFE: -0.646 GC content %: 44.602 | |
| Atauschii_AET7Gv20757400.18 AET7Gv20757400.18 |
Low | No | 894 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -31.723 AMFE: -0.634 GC content %: 50.000 | |
| Atauschii_AET7Gv20757400.19 AET7Gv20757400.19 |
Low | No | 762 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -32.454 AMFE: -0.623 GC content %: 52.100 | |
| Atauschii_AET7Gv20757400.20 AET7Gv20757400.20 |
Low | No | 2430 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -0.791 Folding energies... MFEI: -26.728 AMFE: -0.628 GC content %: 42.551 | |
| Atauschii_AET7Gv20757400.24 AET7Gv20757400.24 |
Low | No | 1392 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -24.849 AMFE: -0.612 GC content %: 40.589 | |
| Atauschii_AET7Gv20757400.26 AET7Gv20757400.26 |
Low | No | 1020 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -1.014 Folding energies... MFEI: -27.814 AMFE: -0.624 GC content %: 44.608 | |
| Atauschii_AET7Gv20757400.28 AET7Gv20757400.28 |
Low | No | 1314 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -25.548 AMFE: -0.629 GC content %: 40.639 | |
| Atauschii_AET7Gv20757400.29 AET7Gv20757400.29 |
Low | No | 2372 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -25.072 AMFE: -0.630 GC content %: 39.798 | |
| Atauschii_AET7Gv20757400.30 AET7Gv20757400.30 |
Low | No | 2222 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -0.781 Folding energies... MFEI: -24.284 AMFE: -0.625 GC content %: 38.839 | |
| Atauschii_AET7Gv20757400.31 AET7Gv20757400.31 |
Low | No | 1206 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -24.345 AMFE: -0.630 GC content %: 38.640 | |
| Atauschii_AET7Gv20757400.32 AET7Gv20757400.32 |
Low | No | 1278 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -27.387 AMFE: -0.648 GC content %: 42.254 | |
| Atauschii_AET7Gv20757400.33 AET7Gv20757400.33 |
Low | No | 416 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -1.353 Folding energies... MFEI: -26.034 AMFE: -0.608 GC content %: 42.788 | |
| Atauschii_AET7Gv20757400.34 AET7Gv20757400.34 |
Low | No | 1162 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -23.847 AMFE: -0.624 GC content %: 38.210 | |
| Atauschii_AET7Gv20757400.35 AET7Gv20757400.35 |
Low | No | 2953 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -25.384 AMFE: -0.641 GC content %: 39.621 | |
| Atauschii_AET7Gv20757400.38 AET7Gv20757400.38 |
Low | No | 2099 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -0.794 Folding energies... MFEI: -23.425 AMFE: -0.610 GC content %: 38.399 | |
| Atauschii_AET7Gv20757400.39 AET7Gv20757400.39 |
High | No | 1426 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -0.727 Folding energies... MFEI: -25.217 AMFE: -0.618 GC content %: 40.813 | |
| Atauschii_AET7Gv20757400.40 AET7Gv20757400.40 |
High | No | 1204 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -0.705 Folding energies... MFEI: -24.693 AMFE: -0.614 GC content %: 40.199 | |
| Atauschii_AET7Gv20757400.41 AET7Gv20757400.41 |
High | No | 1965 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -27.089 AMFE: -0.655 GC content %: 41.374 | |
| Atauschii_AET7Gv20757400.42 AET7Gv20757400.42 |
High | No | 1952 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -1.085 Folding energies... MFEI: -26.132 AMFE: -0.639 GC content %: 40.881 | |
| Atauschii_AET7Gv20757400.43 AET7Gv20757400.43 |
High | No | 2531 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -0.795 Folding energies... MFEI: -25.899 AMFE: -0.645 GC content %: 40.182 | |
| Atauschii_AET7Gv20757400.44 AET7Gv20757400.44 |
High | No | 1216 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -25.255 AMFE: -0.623 GC content %: 40.543 | |
| Atauschii_AET7Gv20757400.8 AET7Gv20757400.8 |
Low | No | 2724 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -0.802 Folding energies... MFEI: -26.905 AMFE: -0.638 GC content %: 42.181 | |
| Atauschii_AET7Gv20757400.9 AET7Gv20757400.9 |
Low | No | 2564 | OG0000194 | Get ORF Coding potential... Type: noncoding Potential: -0.796 Folding energies... MFEI: -27.250 AMFE: -0.643 GC content %: 42.356 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv20757400.14 | SwissProt | 2021-04-01 | O81832 | 4.05e-7 |
| Atauschii_AET7Gv20757400.8 | SwissProt | 2021-04-01 | O81832 | 1.12e-6 |
| Atauschii_AET7Gv20757400.31 | SwissProt | 2021-04-01 | O81832 | 2.96e-7 |
| Atauschii_AET7Gv20757400.1 | SwissProt | 2021-04-01 | O81832 | 8.45e-7 |
| Atauschii_AET7Gv20757400.24 | SwissProt | 2021-04-01 | O81832 | 3.97e-7 |
| Atauschii_AET7Gv20757400.15 | SwissProt | 2021-04-01 | O81832 | 1.54e-6 |
| Atauschii_AET7Gv20757400.9 | SwissProt | 2021-04-01 | O81832 | 1.04e-6 |
| Atauschii_AET7Gv20757400.32 | SwissProt | 2021-04-01 | O81832 | 3.35e-7 |
| Atauschii_AET7Gv20757400.10 | SwissProt | 2021-04-01 | Q9SXB5 | 1.39e-6 |
| Atauschii_AET7Gv20757400.26 | SwissProt | 2021-04-01 | O81832 | 1.96e-7 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
