GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET7Gv20768600 [ AET7Gv20768600]	7D	385500247	385504993	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET7Gv20768600.1 AET7Gv20768600.1	Low	No	1982	OG0001282		Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -30.303 AMFE: -0.701 GC content %: 43.239
Atauschii_AET7Gv20768600.14 AET7Gv20768600.14	High	No	1295	OG0026258		Get ORF Coding potential... Type: noncoding Potential: -1.303 Folding energies... MFEI: -23.683 AMFE: -0.636 GC content %: 37.220
Atauschii_AET7Gv20768600.15 AET7Gv20768600.15	High	No	1502	OG0026258		Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -26.099 AMFE: -0.639 GC content %: 40.812
Atauschii_AET7Gv20768600.2 AET7Gv20768600.2	Low	No	2604	OG0001282		Get ORF Coding potential... Type: noncoding Potential: -0.376 Folding energies... MFEI: -29.017 AMFE: -0.690 GC content %: 42.051
Atauschii_AET7Gv20768600.9 AET7Gv20768600.9	Low	No	1195	OG0001282		Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -28.343 AMFE: -0.662 GC content %: 42.845

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET7Gv20768600.2	SwissProt	2021-04-01	O34614	7.94e-11
Atauschii_AET7Gv20768600.9	SwissProt	2021-04-01	O34614	5.59e-8
Atauschii_AET7Gv20768600.1	SwissProt	2021-04-01	O34614	1.75e-10

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).