GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET7Gv20785100 [ AET7Gv20785100]	7D	395501483	395501959	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET7Gv20785100.1 AET7Gv20785100.1	High	No	216	OG0080949		Get ORF Coding potential... Type: noncoding Potential: -0.804 Folding energies... MFEI: -34.306 AMFE: -0.656 GC content %: 52.315
Atauschii_AET7Gv20785100.2 AET7Gv20785100.2	High	No	262	OG0004698		Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -40.038 AMFE: -0.744 GC content %: 53.817
Atauschii_AET7Gv20785100.3 AET7Gv20785100.3	High	No	234	OG0080950		Get ORF Coding potential... Type: noncoding Potential: -0.947 Folding energies... MFEI: -43.504 AMFE: -0.760 GC content %: 57.265

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).