Atauschii AET7Gv20790700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20790700 [ AET7Gv20790700] |
7D | 399835006 | 399839059 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20790700.11 AET7Gv20790700.11 |
High | No | 2529 | OG0000889 | Get ORF Coding potential... Type: noncoding Potential: -1.234 Folding energies... MFEI: -25.453 AMFE: -0.671 GC content %: 37.920 | |
| Atauschii_AET7Gv20790700.12 AET7Gv20790700.12 |
High | No | 2749 | OG0000889 | Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -25.406 AMFE: -0.666 GC content %: 38.123 | |
| Atauschii_AET7Gv20790700.13 AET7Gv20790700.13 |
High | No | 3199 | OG0000889 | Get ORF Coding potential... Type: noncoding Potential: -1.212 Folding energies... MFEI: -28.571 AMFE: -0.661 GC content %: 43.201 | |
| Atauschii_AET7Gv20790700.14 AET7Gv20790700.14 |
High | No | 2930 | OG0000889 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -29.307 AMFE: -0.667 GC content %: 43.925 | |
| Atauschii_AET7Gv20790700.15 AET7Gv20790700.15 |
High | No | 1535 | OG0000889 | Get ORF Coding potential... Type: noncoding Potential: -1.216 Folding energies... MFEI: -33.407 AMFE: -0.650 GC content %: 51.401 | |
| Atauschii_AET7Gv20790700.16 AET7Gv20790700.16 |
High | No | 1329 | OG0000889 | Get ORF Coding potential... Type: noncoding Potential: -1.206 Folding energies... MFEI: -34.522 AMFE: -0.655 GC content %: 52.671 | |
| Atauschii_AET7Gv20790700.17 AET7Gv20790700.17 |
High | No | 1029 | OG0000889 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -25.452 AMFE: -0.616 GC content %: 41.302 | |
| Atauschii_AET7Gv20790700.19 AET7Gv20790700.19 |
High | No | 1941 | OG0000889 | Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -25.868 AMFE: -0.669 GC content %: 38.691 | |
| Atauschii_AET7Gv20790700.20 AET7Gv20790700.20 |
High | No | 1420 | OG0007111 | Get ORF Coding potential... Type: noncoding Potential: -1.211 Folding energies... MFEI: -34.437 AMFE: -0.662 GC content %: 52.042 | |
| Atauschii_AET7Gv20790700.21 AET7Gv20790700.21 |
High | No | 1089 | OG0000889 | Get ORF Coding potential... Type: noncoding Potential: -1.109 Folding energies... MFEI: -32.525 AMFE: -0.631 GC content %: 51.515 | |
| Atauschii_AET7Gv20790700.3 AET7Gv20790700.3 |
High | No | 1600 | OG0000889 | Get ORF Coding potential... Type: noncoding Potential: -1.219 Folding energies... MFEI: -33.987 AMFE: -0.657 GC content %: 51.750 | |
| Atauschii_AET7Gv20790700.4 AET7Gv20790700.4 |
High | No | 3083 | OG0000889 | Get ORF Coding potential... Type: noncoding Potential: -1.252 Folding energies... MFEI: -29.899 AMFE: -0.677 GC content %: 44.145 | |
| Atauschii_AET7Gv20790700.5 AET7Gv20790700.5 |
High | No | 2942 | OG0000889 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -29.813 AMFE: -0.669 GC content %: 44.596 | |
| Atauschii_AET7Gv20790700.6 AET7Gv20790700.6 |
High | No | 2899 | OG0000889 | Get ORF Coding potential... Type: noncoding Potential: -1.206 Folding energies... MFEI: -25.902 AMFE: -0.672 GC content %: 38.565 | |
| Atauschii_AET7Gv20790700.7 AET7Gv20790700.7 |
High | No | 2624 | OG0000889 | Get ORF Coding potential... Type: noncoding Potential: -1.237 Folding energies... MFEI: -26.425 AMFE: -0.688 GC content %: 38.415 | |
| Atauschii_AET7Gv20790700.9 AET7Gv20790700.9 |
High | No | 2931 | OG0000889 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -29.505 AMFE: -0.664 GC content %: 44.422 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
