Atauschii AET7Gv20807000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20807000 [ AET7Gv20807000] |
7D | 410515466 | 410519977 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20807000.10 AET7Gv20807000.10 |
Low | No | 2186 | OG0000793 | Get ORF Coding potential... Type: noncoding Potential: -0.981 Folding energies... MFEI: -32.328 AMFE: -0.632 GC content %: 51.189 | |
| Atauschii_AET7Gv20807000.13 AET7Gv20807000.13 |
Low | No | 2555 | OG0000793 | Get ORF Coding potential... Type: noncoding Potential: -1.059 Folding energies... MFEI: -30.622 AMFE: -0.637 GC content %: 48.102 | |
| Atauschii_AET7Gv20807000.15 AET7Gv20807000.15 |
Low | No | 1772 | OG0000793 | Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -35.203 AMFE: -0.643 GC content %: 54.740 | |
| Atauschii_AET7Gv20807000.23 AET7Gv20807000.23 |
Low | No | 2531 | OG0000793 | Get ORF Coding potential... Type: noncoding Potential: -1.125 Folding energies... MFEI: -31.762 AMFE: -0.656 GC content %: 48.439 | |
| Atauschii_AET7Gv20807000.25 AET7Gv20807000.25 |
Low | No | 3280 | OG0000793 | Get ORF Coding potential... Type: noncoding Potential: -0.851 Folding energies... MFEI: -32.018 AMFE: -0.658 GC content %: 48.628 | |
| Atauschii_AET7Gv20807000.3 AET7Gv20807000.3 |
Low | No | 2603 | OG0000793 | Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -31.410 AMFE: -0.644 GC content %: 48.790 | |
| Atauschii_AET7Gv20807000.30 AET7Gv20807000.30 |
Low | No | 2525 | OG0000793 | Get ORF Coding potential... Type: noncoding Potential: -0.933 Folding energies... MFEI: -31.644 AMFE: -0.649 GC content %: 48.752 | |
| Atauschii_AET7Gv20807000.31 AET7Gv20807000.31 |
Low | No | 2318 | OG0000793 | Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -32.118 AMFE: -0.645 GC content %: 49.784 | |
| Atauschii_AET7Gv20807000.34 AET7Gv20807000.34 |
Low | No | 1629 | OG0000793 | Get ORF Coding potential... Type: noncoding Potential: -1.079 Folding energies... MFEI: -34.303 AMFE: -0.703 GC content %: 48.803 | |
| Atauschii_AET7Gv20807000.37 AET7Gv20807000.37 |
High | No | 559 | OG0000793 | Get ORF Coding potential... Type: noncoding Potential: -0.854 Folding energies... MFEI: -29.267 AMFE: -0.629 GC content %: 46.512 | |
| Atauschii_AET7Gv20807000.39 AET7Gv20807000.39 |
High | No | 1244 | OG0016791 | Get ORF Coding potential... Type: noncoding Potential: -1.062 Folding energies... MFEI: -34.469 AMFE: -0.674 GC content %: 51.125 | |
| Atauschii_AET7Gv20807000.4 AET7Gv20807000.4 |
Low | No | 2580 | OG0000793 | Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -30.841 AMFE: -0.639 GC content %: 48.256 | |
| Atauschii_AET7Gv20807000.40 AET7Gv20807000.40 |
High | No | 3201 | OG0000793 | Get ORF Coding potential... Type: noncoding Potential: -1.165 Folding energies... MFEI: -28.775 AMFE: -0.683 GC content %: 42.143 | |
| Atauschii_AET7Gv20807000.41 AET7Gv20807000.41 |
Low | No | 387 | OG0000793 | Get ORF Coding potential... Type: noncoding Potential: -0.936 Folding energies... MFEI: -20.775 AMFE: -0.574 GC content %: 36.176 | |
| Atauschii_AET7Gv20807000.6 AET7Gv20807000.6 |
Low | No | 2321 | OG0000793 | Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -31.896 AMFE: -0.636 GC content %: 50.151 | |
| Atauschii_AET7Gv20807000.7 AET7Gv20807000.7 |
Low | No | 2459 | OG0000793 | Get ORF Coding potential... Type: noncoding Potential: -1.123 Folding energies... MFEI: -31.674 AMFE: -0.645 GC content %: 49.085 | |
| Atauschii_AET7Gv20807000.8 AET7Gv20807000.8 |
Low | No | 2936 | OG0000793 | Get ORF Coding potential... Type: noncoding Potential: -1.137 Folding energies... MFEI: -30.433 AMFE: -0.655 GC content %: 46.458 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv20807000.4 | SwissProt | 2021-04-01 | W5BGD1 | 5.87e-7 |
| Atauschii_AET7Gv20807000.25 | SwissProt | 2021-04-01 | W5BGD1 | 4.66e-7 |
| Atauschii_AET7Gv20807000.41 | SwissProt | 2021-04-01 | A0A078 | 5.5e-4 |
| Atauschii_AET7Gv20807000.3 | SwissProt | 2021-04-01 | W5BGD1 | 6.38e-7 |
| Atauschii_AET7Gv20807000.10 | SwissProt | 2021-04-01 | W5BGD1 | 3.79e-7 |
| Atauschii_AET7Gv20807000.6 | SwissProt | 2021-04-01 | W5BGD1 | 4.49e-7 |
| Atauschii_AET7Gv20807000.30 | SwissProt | 2021-04-01 | W5BGD1 | 3.46e-7 |
| Atauschii_AET7Gv20807000.13 | SwissProt | 2021-04-01 | W5BGD1 | 4.88e-7 |
| Atauschii_AET7Gv20807000.7 | SwissProt | 2021-04-01 | W5BGD1 | 5.74e-7 |
| Atauschii_AET7Gv20807000.31 | SwissProt | 2021-04-01 | W5BGD1 | 3.11e-7 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
