GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET7Gv20835800 [ AET7Gv20835800]	7D	426409355	426412925	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET7Gv20835800.7 AET7Gv20835800.7	Low	No	630	OG0081027		Get ORF Coding potential... Type: noncoding Potential: -0.149 Folding energies... MFEI: -25.111 AMFE: -0.608 GC content %: 41.270
Atauschii_AET7Gv20835800.8 AET7Gv20835800.8	Low	No	304	OG0000395		Get ORF Coding potential... Type: noncoding Potential: -0.913 Folding energies... MFEI: -32.171 AMFE: -0.656 GC content %: 49.013

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET7Gv20835800.8	SwissProt	2021-04-01	Q8LB72	2.74e-4
Atauschii_AET7Gv20835800.8	RepBase (RepeatMasker)	2014-01-31	SINE/tRNA
Atauschii_AET7Gv20835800.7	SwissProt	2021-04-01	Q8LB72	1.03e-13

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).