GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET7Gv20852500 [ AET7Gv20852500]	7D	439027237	439028536	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET7Gv20852500.1 AET7Gv20852500.1	High	No	349	OG0026289		Get ORF Coding potential... Type: noncoding Potential: -0.853 Folding energies... MFEI: -34.728 AMFE: -0.548 GC content %: 63.324
Atauschii_AET7Gv20852500.4 AET7Gv20852500.4	High	No	241	OG0026289		Get ORF Coding potential... Type: noncoding Potential: -0.931 Folding energies... MFEI: -38.340 AMFE: -0.585 GC content %: 65.560
Atauschii_AET7Gv20852500.5 AET7Gv20852500.5	High	No	385	OG0081057		Get ORF Coding potential... Type: noncoding Potential: -1.387 Folding energies... MFEI: -23.065 AMFE: -0.535 GC content %: 43.117

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).