GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET7Gv20883100 [ AET7Gv20883100]	7D	458385895	458386373	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET7Gv20883100.1 AET7Gv20883100.1	High	No	291	OG0081120		Get ORF Coding potential... Type: noncoding Potential: -1.082 Folding energies... MFEI: -33.196 AMFE: -0.631 GC content %: 52.577
Atauschii_AET7Gv20883100.2 AET7Gv20883100.2	Low	No	335	OG0000610		Get ORF Coding potential... Type: noncoding Potential: -1.467 Folding energies... MFEI: -34.209 AMFE: -0.749 GC content %: 45.672
Atauschii_AET7Gv20883100.3 AET7Gv20883100.3	High	No	284	OG0000610		Get ORF Coding potential... Type: noncoding Potential: -1.056 Folding energies... MFEI: -30.563 AMFE: -0.673 GC content %: 45.423

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET7Gv20883100.2	SwissProt	2021-04-01	Q9FHE1	3.59e-5

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).