Atauschii AET7Gv20912800
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20912800 [ AET7Gv20912800] |
7D | 477266303 | 477277601 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20912800.1 AET7Gv20912800.1 |
Low | Yes | 2058 | OG0002969 | Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -28.591 AMFE: -0.670 GC content %: 42.663 | |
| Atauschii_AET7Gv20912800.2 AET7Gv20912800.2 |
Low | Yes | 1708 | OG0002969 | Get ORF Coding potential... Type: noncoding Potential: -1.010 Folding energies... MFEI: -27.278 AMFE: -0.657 GC content %: 41.511 | |
| Atauschii_AET7Gv20912800.3 AET7Gv20912800.3 |
High | No | 405 | OG0002969 | Get ORF Coding potential... Type: noncoding Potential: -0.967 Folding energies... MFEI: -22.938 AMFE: -0.453 GC content %: 50.617 | |
| Atauschii_AET7Gv20912800.4 AET7Gv20912800.4 |
High | No | 2249 | OG0002969 | Get ORF Coding potential... Type: noncoding Potential: -1.107 Folding energies... MFEI: -27.190 AMFE: -0.636 GC content %: 42.775 | |
| Atauschii_AET7Gv20912800.5 AET7Gv20912800.5 |
High | No | 2811 | OG0002969 | Get ORF Coding potential... Type: noncoding Potential: -1.202 Folding energies... MFEI: -25.902 AMFE: -0.626 GC content %: 41.373 | |
| Atauschii_AET7Gv20912800.6 AET7Gv20912800.6 |
High | No | 1310 | OG0002969 | Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -25.809 AMFE: -0.645 GC content %: 40.000 | |
| Atauschii_AET7Gv20912800.7 AET7Gv20912800.7 |
High | No | 527 | OG0002969 | Get ORF Coding potential... Type: noncoding Potential: -0.724 Folding energies... MFEI: -27.343 AMFE: -0.683 GC content %: 40.038 | |
| Atauschii_AET7Gv20912800.8 AET7Gv20912800.8 |
High | No | 1454 | OG0002969 | Get ORF Coding potential... Type: noncoding Potential: -1.079 Folding energies... MFEI: -25.536 AMFE: -0.639 GC content %: 39.959 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv20912800.1 | Rfam | 14.6 | mir-399 | 7.0e-18 |
| Atauschii_AET7Gv20912800.2 | Rfam | 14.6 | mir-399 | 5.8e-18 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
