Atauschii AET7Gv20927500
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20927500 [ AET7Gv20927500] |
7D | 485752385 | 485755649 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20927500.1 AET7Gv20927500.1 |
High | No | 1147 | OG0001936 | Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -35.048 AMFE: -0.966 GC content %: 36.269 | |
| Atauschii_AET7Gv20927500.10 AET7Gv20927500.10 |
Low | Yes | 350 | OG0001936 | Get ORF Coding potential... Type: noncoding Potential: -1.038 Folding energies... MFEI: -24.457 AMFE: -0.639 GC content %: 38.286 | |
| Atauschii_AET7Gv20927500.2 AET7Gv20927500.2 |
High | No | 889 | OG0001936 | Get ORF Coding potential... Type: noncoding Potential: -1.062 Folding energies... MFEI: -37.244 AMFE: -1.025 GC content %: 36.333 | |
| Atauschii_AET7Gv20927500.3 AET7Gv20927500.3 |
High | No | 1378 | OG0001936 | Get ORF Coding potential... Type: noncoding Potential: -1.108 Folding energies... MFEI: -34.702 AMFE: -0.876 GC content %: 39.623 | |
| Atauschii_AET7Gv20927500.4 AET7Gv20927500.4 |
Low | No | 2683 | OG0001936 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -32.795 AMFE: -0.791 GC content %: 41.483 | |
| Atauschii_AET7Gv20927500.5 AET7Gv20927500.5 |
Low | No | 2793 | OG0001936 | Get ORF Coding potential... Type: noncoding Potential: -1.202 Folding energies... MFEI: -32.442 AMFE: -0.785 GC content %: 41.318 | |
| Atauschii_AET7Gv20927500.6 AET7Gv20927500.6 |
High | No | 1828 | OG0001936 | Get ORF Coding potential... Type: noncoding Potential: -1.152 Folding energies... MFEI: -33.184 AMFE: -0.857 GC content %: 38.731 | |
| Atauschii_AET7Gv20927500.7 AET7Gv20927500.7 |
Low | No | 2767 | OG0001936 | Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -32.682 AMFE: -0.817 GC content %: 40.007 | |
| Atauschii_AET7Gv20927500.8 AET7Gv20927500.8 |
High | No | 1373 | OG0001936 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -28.747 AMFE: -0.750 GC content %: 38.310 | |
| Atauschii_AET7Gv20927500.9 AET7Gv20927500.9 |
Low | No | 1736 | OG0001936 | Get ORF Coding potential... Type: noncoding Potential: -1.119 Folding energies... MFEI: -29.931 AMFE: -0.711 GC content %: 42.108 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv20927500.5 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET7Gv20927500.7 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET7Gv20927500.4 | SwissProt | 2021-04-01 | P0C2F6 | 1.32e-4 |
| Atauschii_AET7Gv20927500.9 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET7Gv20927500.5 | SwissProt | 2021-04-01 | P0C2F6 | 1.39e-4 |
| Atauschii_AET7Gv20927500.10 | Rfam | 14.6 | MIR828 | 0.0088 |
| Atauschii_AET7Gv20927500.4 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
