Atauschii AET7Gv20930900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20930900 [ AET7Gv20930900] |
7D | 488294891 | 488299814 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20930900.1 AET7Gv20930900.1 |
High | No | 4530 | OG0001327 | Get ORF Coding potential... Type: noncoding Potential: -1.123 Folding energies... MFEI: -27.362 AMFE: -0.650 GC content %: 42.097 | |
| Atauschii_AET7Gv20930900.10 AET7Gv20930900.10 |
High | No | 2831 | OG0001327 | Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -29.647 AMFE: -0.636 GC content %: 46.627 | |
| Atauschii_AET7Gv20930900.11 AET7Gv20930900.11 |
High | No | 2689 | OG0001327 | Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -29.751 AMFE: -0.628 GC content %: 47.341 | |
| Atauschii_AET7Gv20930900.12 AET7Gv20930900.12 |
High | No | 2566 | OG0001327 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -30.062 AMFE: -0.628 GC content %: 47.857 | |
| Atauschii_AET7Gv20930900.2 AET7Gv20930900.2 |
High | No | 4450 | OG0001327 | Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -27.319 AMFE: -0.647 GC content %: 42.225 | |
| Atauschii_AET7Gv20930900.3 AET7Gv20930900.3 |
High | No | 4526 | OG0001327 | Get ORF Coding potential... Type: noncoding Potential: -1.123 Folding energies... MFEI: -27.141 AMFE: -0.648 GC content %: 41.913 | |
| Atauschii_AET7Gv20930900.4 AET7Gv20930900.4 |
High | No | 4310 | OG0001327 | Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -27.568 AMFE: -0.645 GC content %: 42.738 | |
| Atauschii_AET7Gv20930900.5 AET7Gv20930900.5 |
High | No | 3830 | OG0001327 | Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -28.308 AMFE: -0.650 GC content %: 43.577 | |
| Atauschii_AET7Gv20930900.6 AET7Gv20930900.6 |
High | No | 4105 | OG0001327 | Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -27.993 AMFE: -0.648 GC content %: 43.191 | |
| Atauschii_AET7Gv20930900.7 AET7Gv20930900.7 |
High | No | 4054 | OG0001327 | Get ORF Coding potential... Type: noncoding Potential: -1.115 Folding energies... MFEI: -28.029 AMFE: -0.646 GC content %: 43.389 | |
| Atauschii_AET7Gv20930900.8 AET7Gv20930900.8 |
High | No | 2556 | OG0001327 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -30.219 AMFE: -0.635 GC content %: 47.574 | |
| Atauschii_AET7Gv20930900.9 AET7Gv20930900.9 |
High | No | 2708 | OG0001327 | Get ORF Coding potential... Type: noncoding Potential: -1.082 Folding energies... MFEI: -29.889 AMFE: -0.635 GC content %: 47.083 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
