Atauschii AET7Gv20946200
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20946200 [ AET7Gv20946200] |
7D | 498252559 | 498257150 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20946200.1 AET7Gv20946200.1 |
Low | No | 2047 | OG0001012 | Get ORF Coding potential... Type: noncoding Potential: -0.906 Folding energies... MFEI: -31.720 AMFE: -0.627 GC content %: 50.611 | |
| Atauschii_AET7Gv20946200.10 AET7Gv20946200.10 |
Low | No | 2006 | OG0001012 | Get ORF Coding potential... Type: noncoding Potential: -0.940 Folding energies... MFEI: -31.505 AMFE: -0.627 GC content %: 50.249 | |
| Atauschii_AET7Gv20946200.20 AET7Gv20946200.20 |
High | No | 1199 | OG0001012 | Get ORF Coding potential... Type: noncoding Potential: -0.467 Folding energies... MFEI: -32.527 AMFE: -0.621 GC content %: 52.377 | |
| Atauschii_AET7Gv20946200.21 AET7Gv20946200.21 |
High | No | 945 | OG0001012 | Get ORF Coding potential... Type: noncoding Potential: -0.399 Folding energies... MFEI: -33.683 AMFE: -0.618 GC content %: 54.497 | |
| Atauschii_AET7Gv20946200.25 AET7Gv20946200.25 |
Low | No | 2298 | OG0001012 | Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -30.531 AMFE: -0.624 GC content %: 48.956 | |
| Atauschii_AET7Gv20946200.27 AET7Gv20946200.27 |
Low | No | 2305 | OG0001012 | Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -30.195 AMFE: -0.620 GC content %: 48.677 | |
| Atauschii_AET7Gv20946200.30 AET7Gv20946200.30 |
High | No | 1145 | OG0001012 | Get ORF Coding potential... Type: noncoding Potential: -0.454 Folding energies... MFEI: -31.109 AMFE: -0.615 GC content %: 50.568 | |
| Atauschii_AET7Gv20946200.31 AET7Gv20946200.31 |
Low | No | 1236 | OG0001012 | Get ORF Coding potential... Type: noncoding Potential: -0.771 Folding energies... MFEI: -29.045 AMFE: -0.606 GC content %: 47.896 | |
| Atauschii_AET7Gv20946200.34 AET7Gv20946200.34 |
Low | No | 1931 | OG0001012 | Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -26.939 AMFE: -0.588 GC content %: 45.779 | |
| Atauschii_AET7Gv20946200.38 AET7Gv20946200.38 |
Low | No | 1285 | OG0001012 | Get ORF Coding potential... Type: noncoding Potential: -0.775 Folding energies... MFEI: -27.992 AMFE: -0.587 GC content %: 47.704 | |
| Atauschii_AET7Gv20946200.41 AET7Gv20946200.41 |
Low | No | 1461 | OG0001012 | Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -26.051 AMFE: -0.585 GC content %: 44.559 | |
| Atauschii_AET7Gv20946200.42 AET7Gv20946200.42 |
High | No | 887 | OG0001012 | Get ORF Coding potential... Type: noncoding Potential: -0.859 Folding energies... MFEI: -26.561 AMFE: -0.598 GC content %: 44.419 | |
| Atauschii_AET7Gv20946200.43 AET7Gv20946200.43 |
High | No | 1168 | OG0001012 | Get ORF Coding potential... Type: noncoding Potential: -0.913 Folding energies... MFEI: -26.241 AMFE: -0.601 GC content %: 43.664 | |
| Atauschii_AET7Gv20946200.44 AET7Gv20946200.44 |
High | No | 1057 | OG0001012 | Get ORF Coding potential... Type: noncoding Potential: -0.710 Folding energies... MFEI: -26.859 AMFE: -0.604 GC content %: 44.465 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv20946200.31 | SwissProt | 2021-04-01 | Q9LKR4 | 8.44e-8 |
| Atauschii_AET7Gv20946200.34 | SwissProt | 2021-04-01 | Q9LKR4 | 1.89e-7 |
| Atauschii_AET7Gv20946200.1 | SwissProt | 2021-04-01 | Q9LKR4 | 2.06e-7 |
| Atauschii_AET7Gv20946200.38 | SwissProt | 2021-04-01 | Q9LKR4 | 9.12e-8 |
| Atauschii_AET7Gv20946200.10 | SwissProt | 2021-04-01 | Q9LKR4 | 2.01e-7 |
| Atauschii_AET7Gv20946200.41 | SwissProt | 2021-04-01 | Q9ZVC9 | 7.85e-7 |
| Atauschii_AET7Gv20946200.25 | SwissProt | 2021-04-01 | Q9LKR4 | 2.45e-7 |
| Atauschii_AET7Gv20946200.27 | SwissProt | 2021-04-01 | Q9LKR4 | 2.45e-7 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
