Atauschii AET7Gv20951600
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20951600 [ AET7Gv20951600] |
7D | 501078376 | 501085082 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20951600.19 AET7Gv20951600.19 |
High | No | 2878 | OG0004854 | Get ORF Coding potential... Type: noncoding Potential: -0.857 Folding energies... MFEI: -32.839 AMFE: -0.636 GC content %: 51.598 | |
| Atauschii_AET7Gv20951600.2 AET7Gv20951600.2 |
High | No | 3086 | OG0004854 | Get ORF Coding potential... Type: noncoding Potential: -0.951 Folding energies... MFEI: -33.172 AMFE: -0.649 GC content %: 51.134 | |
| Atauschii_AET7Gv20951600.20 AET7Gv20951600.20 |
High | No | 3710 | OG0004854 | Get ORF Coding potential... Type: noncoding Potential: -0.967 Folding energies... MFEI: -31.736 AMFE: -0.651 GC content %: 48.733 | |
| Atauschii_AET7Gv20951600.24 AET7Gv20951600.24 |
High | No | 793 | OG0004854 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -27.654 AMFE: -0.591 GC content %: 46.784 | |
| Atauschii_AET7Gv20951600.25 AET7Gv20951600.25 |
High | No | 1102 | OG0004854 | Get ORF Coding potential... Type: noncoding Potential: -1.062 Folding energies... MFEI: -36.815 AMFE: -0.580 GC content %: 63.521 | |
| Atauschii_AET7Gv20951600.26 AET7Gv20951600.26 |
High | No | 1009 | OG0004854 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -37.522 AMFE: -0.585 GC content %: 64.123 | |
| Atauschii_AET7Gv20951600.7 AET7Gv20951600.7 |
High | No | 1457 | OG0000119 | Get ORF Coding potential... Type: noncoding Potential: -0.762 Folding energies... MFEI: -28.312 AMFE: -0.624 GC content %: 45.367 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
