Atauschii AET7Gv20983100
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20983100 [ AET7Gv20983100] |
7D | 514837589 | 514842618 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20983100.27 AET7Gv20983100.27 |
Low | Yes | 1816 | OG0001938 | Get ORF Coding potential... Type: noncoding Potential: -0.056 Folding energies... MFEI: -35.072 AMFE: -0.677 GC content %: 51.817 | |
| Atauschii_AET7Gv20983100.33 AET7Gv20983100.33 |
Low | No | 1195 | OG0007128 | Get ORF Coding potential... Type: noncoding Potential: -0.088 Folding energies... MFEI: -28.929 AMFE: -0.650 GC content %: 44.519 | |
| Atauschii_AET7Gv20983100.4 AET7Gv20983100.4 |
Low | No | 1668 | OG0001938 | Get ORF Coding potential... Type: noncoding Potential: -0.006 Folding energies... MFEI: -28.969 AMFE: -0.644 GC content %: 44.964 | |
| Atauschii_AET7Gv20983100.40 AET7Gv20983100.40 |
Low | No | 1456 | OG0007128 | Get ORF Coding potential... Type: noncoding Potential: -0.248 Folding energies... MFEI: -30.570 AMFE: -0.632 GC content %: 48.352 | |
| Atauschii_AET7Gv20983100.43 AET7Gv20983100.43 |
Low | No | 458 | OG0007128 | Get ORF Coding potential... Type: noncoding Potential: -0.035 Folding energies... MFEI: -27.555 AMFE: -0.598 GC content %: 46.070 | |
| Atauschii_AET7Gv20983100.44 AET7Gv20983100.44 |
Low | No | 1432 | OG0001938 | Get ORF Coding potential... Type: noncoding Potential: -0.063 Folding energies... MFEI: -24.413 AMFE: -0.652 GC content %: 37.430 | |
| Atauschii_AET7Gv20983100.45 AET7Gv20983100.45 |
Low | No | 1694 | OG0001938 | Get ORF Coding potential... Type: noncoding Potential: -0.238 Folding energies... MFEI: -24.191 AMFE: -0.634 GC content %: 38.135 | |
| Atauschii_AET7Gv20983100.47 AET7Gv20983100.47 |
Low | No | 1838 | OG0001938 | Get ORF Coding potential... Type: noncoding Potential: -0.111 Folding energies... MFEI: -27.476 AMFE: -0.655 GC content %: 41.948 | |
| Atauschii_AET7Gv20983100.48 AET7Gv20983100.48 |
Low | No | 1919 | OG0001938 | Get ORF Coding potential... Type: noncoding Potential: -0.245 Folding energies... MFEI: -27.066 AMFE: -0.649 GC content %: 41.688 | |
| Atauschii_AET7Gv20983100.57 AET7Gv20983100.57 |
High | No | 598 | OG0001938 | Get ORF Coding potential... Type: noncoding Potential: -1.056 Folding energies... MFEI: -22.793 AMFE: -0.575 GC content %: 39.632 | |
| Atauschii_AET7Gv20983100.58 AET7Gv20983100.58 |
High | No | 687 | OG0001938 | Get ORF Coding potential... Type: noncoding Potential: -0.876 Folding energies... MFEI: -30.553 AMFE: -0.623 GC content %: 49.054 | |
| Atauschii_AET7Gv20983100.6 AET7Gv20983100.6 |
Low | Yes | 1905 | OG0001938 | Get ORF Coding potential... Type: noncoding Potential: -0.071 Folding energies... MFEI: -34.966 AMFE: -0.678 GC content %: 51.549 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv20983100.40 | SwissProt | 2021-04-01 | Q54R82 | 1.41e-22 |
| Atauschii_AET7Gv20983100.6 | SwissProt | 2021-04-01 | O22040 | 1.14e-38 |
| Atauschii_AET7Gv20983100.43 | SwissProt | 2021-04-01 | O22040 | 1.24e-51 |
| Atauschii_AET7Gv20983100.27 | Rfam | 14.6 | mir-207 | 2.8e-4 |
| Atauschii_AET7Gv20983100.44 | SwissProt | 2021-04-01 | O22040 | 3.83e-38 |
| Atauschii_AET7Gv20983100.27 | SwissProt | 2021-04-01 | O22040 | 1.07e-38 |
| Atauschii_AET7Gv20983100.6 | Rfam | 14.6 | mir-207 | 2.9e-4 |
| Atauschii_AET7Gv20983100.45 | SwissProt | 2021-04-01 | O22040 | 3.55e-33 |
| Atauschii_AET7Gv20983100.33 | SwissProt | 2021-04-01 | O22040 | 1.0e-37 |
| Atauschii_AET7Gv20983100.47 | SwissProt | 2021-04-01 | O22040 | 3.91e-33 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
