GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET7Gv21009300 [ AET7Gv21009300]	7D	529218593	529222469	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET7Gv21009300.1 AET7Gv21009300.1	High	No	451	OG0081335		Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -27.539 AMFE: -0.586 GC content %: 47.007
Atauschii_AET7Gv21009300.15 AET7Gv21009300.15	High	No	718	OG0081336		Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -33.120 AMFE: -0.634 GC content %: 52.228
Atauschii_AET7Gv21009300.7 AET7Gv21009300.7	Low	No	653	OG0081337		Get ORF Coding potential... Type: noncoding Potential: -0.946 Folding energies... MFEI: -27.963 AMFE: -0.580 GC content %: 48.239

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET7Gv21009300.7	SwissProt	2021-04-01	Q8W4B2	7.07e-9

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).