Atauschii AET7Gv21036000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv21036000 [ AET7Gv21036000] |
7D | 541651393 | 541653701 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv21036000.1 AET7Gv21036000.1 |
High | No | 2309 | OG0004856 | Get ORF Coding potential... Type: noncoding Potential: -1.134 Folding energies... MFEI: -28.519 AMFE: -0.657 GC content %: 43.439 | |
| Atauschii_AET7Gv21036000.2 AET7Gv21036000.2 |
High | No | 1577 | OG0004856 | Get ORF Coding potential... Type: noncoding Potential: -1.299 Folding energies... MFEI: -28.763 AMFE: -0.639 GC content %: 45.022 | |
| Atauschii_AET7Gv21036000.3 AET7Gv21036000.3 |
High | No | 2031 | OG0004856 | Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -27.213 AMFE: -0.665 GC content %: 40.916 | |
| Atauschii_AET7Gv21036000.4 AET7Gv21036000.4 |
High | No | 1495 | OG0004856 | Get ORF Coding potential... Type: noncoding Potential: -1.293 Folding energies... MFEI: -27.813 AMFE: -0.627 GC content %: 44.348 | |
| Atauschii_AET7Gv21036000.5 AET7Gv21036000.5 |
High | No | 2196 | OG0004856 | Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -28.197 AMFE: -0.654 GC content %: 43.124 | |
| Atauschii_AET7Gv21036000.6 AET7Gv21036000.6 |
High | No | 1438 | OG0004856 | Get ORF Coding potential... Type: noncoding Potential: -1.289 Folding energies... MFEI: -28.317 AMFE: -0.634 GC content %: 44.645 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
