Atauschii AET7Gv21051500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv21051500 [ AET7Gv21051500] |
7D | 547809695 | 547815136 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv21051500.10 AET7Gv21051500.10 |
High | No | 2447 | OG0001601 | Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -32.750 AMFE: -0.716 GC content %: 45.729 | |
| Atauschii_AET7Gv21051500.11 AET7Gv21051500.11 |
High | No | 1200 | OG0001601 | Get ORF Coding potential... Type: noncoding Potential: -1.115 Folding energies... MFEI: -35.567 AMFE: -0.704 GC content %: 50.500 | |
| Atauschii_AET7Gv21051500.12 AET7Gv21051500.12 |
High | No | 1717 | OG0001601 | Get ORF Coding potential... Type: noncoding Potential: -1.180 Folding energies... MFEI: -37.769 AMFE: -0.709 GC content %: 53.291 | |
| Atauschii_AET7Gv21051500.13 AET7Gv21051500.13 |
High | No | 1171 | OG0001601 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -36.285 AMFE: -0.700 GC content %: 51.836 | |
| Atauschii_AET7Gv21051500.14 AET7Gv21051500.14 |
High | No | 1639 | OG0001601 | Get ORF Coding potential... Type: noncoding Potential: -1.172 Folding energies... MFEI: -38.347 AMFE: -0.710 GC content %: 53.996 | |
| Atauschii_AET7Gv21051500.15 AET7Gv21051500.15 |
High | No | 1406 | OG0001601 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -34.239 AMFE: -0.681 GC content %: 50.284 | |
| Atauschii_AET7Gv21051500.16 AET7Gv21051500.16 |
High | No | 1605 | OG0001601 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -36.156 AMFE: -0.685 GC content %: 52.773 | |
| Atauschii_AET7Gv21051500.3 AET7Gv21051500.3 |
High | No | 1331 | OG0001601 | Get ORF Coding potential... Type: noncoding Potential: -1.135 Folding energies... MFEI: -35.402 AMFE: -0.703 GC content %: 50.338 | |
| Atauschii_AET7Gv21051500.4 AET7Gv21051500.4 |
High | No | 1868 | OG0001601 | Get ORF Coding potential... Type: noncoding Potential: -1.186 Folding energies... MFEI: -32.532 AMFE: -0.715 GC content %: 45.503 | |
| Atauschii_AET7Gv21051500.7 AET7Gv21051500.7 |
High | No | 1356 | OG0001601 | Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -35.170 AMFE: -0.695 GC content %: 50.590 | |
| Atauschii_AET7Gv21051500.9 AET7Gv21051500.9 |
High | No | 2392 | OG0001601 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -34.620 AMFE: -0.703 GC content %: 49.247 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
