Atauschii AET7Gv21054000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv21054000 [ AET7Gv21054000] |
7D | 549259591 | 549262722 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv21054000.1 AET7Gv21054000.1 |
High | No | 2301 | OG0001014 | Get ORF Coding potential... Type: noncoding Potential: -1.205 Folding energies... MFEI: -28.175 AMFE: -0.612 GC content %: 46.023 | |
| Atauschii_AET7Gv21054000.3 AET7Gv21054000.3 |
High | No | 2165 | OG0001014 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -28.905 AMFE: -0.628 GC content %: 46.005 | |
| Atauschii_AET7Gv21054000.4 AET7Gv21054000.4 |
High | No | 2306 | OG0001014 | Get ORF Coding potential... Type: noncoding Potential: -1.205 Folding energies... MFEI: -28.903 AMFE: -0.648 GC content %: 44.623 | |
| Atauschii_AET7Gv21054000.5 AET7Gv21054000.5 |
High | No | 2560 | OG0001014 | Get ORF Coding potential... Type: noncoding Potential: -1.146 Folding energies... MFEI: -29.121 AMFE: -0.657 GC content %: 44.336 | |
| Atauschii_AET7Gv21054000.6 AET7Gv21054000.6 |
High | No | 1654 | OG0001014 | Get ORF Coding potential... Type: noncoding Potential: -1.119 Folding energies... MFEI: -29.794 AMFE: -0.623 GC content %: 47.823 | |
| Atauschii_AET7Gv21054000.7 AET7Gv21054000.7 |
High | No | 2072 | OG0001014 | Get ORF Coding potential... Type: noncoding Potential: -1.123 Folding energies... MFEI: -29.035 AMFE: -0.634 GC content %: 45.801 | |
| Atauschii_AET7Gv21054000.9 AET7Gv21054000.9 |
High | No | 2605 | OG0001014 | Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -29.052 AMFE: -0.663 GC content %: 43.839 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
