Atauschii AET7Gv21064600
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv21064600 [ AET7Gv21064600] |
7D | 552889944 | 552897918 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv21064600.1 AET7Gv21064600.1 |
Low | No | 1646 | OG0000407 | Get ORF Coding potential... Type: noncoding Potential: -0.035 Folding energies... MFEI: -30.164 AMFE: -0.628 GC content %: 48.056 | |
| Atauschii_AET7Gv21064600.11 AET7Gv21064600.11 |
Low | No | 2128 | OG0000407 | Get ORF Coding potential... Type: noncoding Potential: -0.985 Folding energies... MFEI: -26.141 AMFE: -0.595 GC content %: 43.938 | |
| Atauschii_AET7Gv21064600.13 AET7Gv21064600.13 |
Low | No | 798 | OG0000407 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -31.867 AMFE: -0.597 GC content %: 53.383 | |
| Atauschii_AET7Gv21064600.14 AET7Gv21064600.14 |
Low | No | 1342 | OG0000407 | Get ORF Coding potential... Type: noncoding Potential: -0.085 Folding energies... MFEI: -29.776 AMFE: -0.618 GC content %: 48.212 | |
| Atauschii_AET7Gv21064600.15 AET7Gv21064600.15 |
Low | No | 1036 | OG0000407 | Get ORF Coding potential... Type: noncoding Potential: -0.835 Folding energies... MFEI: -29.633 AMFE: -0.597 GC content %: 49.614 | |
| Atauschii_AET7Gv21064600.20 AET7Gv21064600.20 |
Low | No | 1662 | OG0000407 | Get ORF Coding potential... Type: noncoding Potential: -0.111 Folding energies... MFEI: -27.665 AMFE: -0.616 GC content %: 44.946 | |
| Atauschii_AET7Gv21064600.22 AET7Gv21064600.22 |
Low | No | 1163 | OG0000407 | Get ORF Coding potential... Type: noncoding Potential: -0.208 Folding energies... MFEI: -27.782 AMFE: -0.606 GC content %: 45.830 | |
| Atauschii_AET7Gv21064600.23 AET7Gv21064600.23 |
High | No | 429 | OG0081419 | Get ORF Coding potential... Type: noncoding Potential: -0.829 Folding energies... MFEI: -28.788 AMFE: -0.523 GC content %: 55.012 | |
| Atauschii_AET7Gv21064600.24 AET7Gv21064600.24 |
Low | No | 1898 | OG0000407 | Get ORF Coding potential... Type: noncoding Potential: -1.104 Folding energies... MFEI: -24.141 AMFE: -0.595 GC content %: 40.569 | |
| Atauschii_AET7Gv21064600.26 AET7Gv21064600.26 |
Low | No | 472 | OG0000407 | Get ORF Coding potential... Type: noncoding Potential: -0.226 Folding energies... MFEI: -23.475 AMFE: -0.554 GC content %: 42.373 | |
| Atauschii_AET7Gv21064600.3 AET7Gv21064600.3 |
Low | No | 1751 | OG0000407 | Get ORF Coding potential... Type: noncoding Potential: -0.851 Folding energies... MFEI: -28.190 AMFE: -0.609 GC content %: 46.259 | |
| Atauschii_AET7Gv21064600.5 AET7Gv21064600.5 |
Low | No | 1139 | OG0000407 | Get ORF Coding potential... Type: noncoding Potential: -0.034 Folding energies... MFEI: -30.448 AMFE: -0.605 GC content %: 50.307 | |
| Atauschii_AET7Gv21064600.6 AET7Gv21064600.6 |
Low | No | 1393 | OG0000407 | Get ORF Coding potential... Type: noncoding Potential: -0.815 Folding energies... MFEI: -30.201 AMFE: -0.630 GC content %: 47.954 | |
| Atauschii_AET7Gv21064600.7 AET7Gv21064600.7 |
Low | No | 3357 | OG0000407 | Get ORF Coding potential... Type: noncoding Potential: -0.903 Folding energies... MFEI: -26.401 AMFE: -0.614 GC content %: 43.015 | |
| Atauschii_AET7Gv21064600.9 AET7Gv21064600.9 |
Low | No | 2771 | OG0000407 | Get ORF Coding potential... Type: noncoding Potential: -0.078 Folding energies... MFEI: -25.922 AMFE: -0.599 GC content %: 43.306 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv21064600.7 | SwissProt | 2021-04-01 | P54873 | 9.62e-9 |
| Atauschii_AET7Gv21064600.24 | SwissProt | 2021-04-01 | P54873 | 3.24e-8 |
| Atauschii_AET7Gv21064600.13 | SwissProt | 2021-04-01 | P54873 | 3.38e-5 |
| Atauschii_AET7Gv21064600.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-Chapaev-3 | |
| Atauschii_AET7Gv21064600.9 | SwissProt | 2021-04-01 | Q5R7Z9 | 4.33e-21 |
| Atauschii_AET7Gv21064600.26 | SwissProt | 2021-04-01 | P54873 | 5.47e-17 |
| Atauschii_AET7Gv21064600.14 | SwissProt | 2021-04-01 | P54873 | 4.23e-9 |
| Atauschii_AET7Gv21064600.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-Chapaev-3 | |
| Atauschii_AET7Gv21064600.3 | SwissProt | 2021-04-01 | P54873 | 2.86e-8 |
| Atauschii_AET7Gv21064600.15 | SwissProt | 2021-04-01 | P54873 | 1.52e-9 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
