GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET7Gv21082900 [ AET7Gv21082900]	7D	558952490	558956052	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET7Gv21082900.4 AET7Gv21082900.4	Low	No	852	OG0016823		Get ORF Coding potential... Type: coding Potential: 0.249 Folding energies... MFEI: -26.831 AMFE: -0.626 GC content %: 42.840
Atauschii_AET7Gv21082900.6 AET7Gv21082900.6	Low	No	1225	OG0016823		Get ORF Coding potential... Type: coding Potential: 0.305 Folding energies... MFEI: -26.955 AMFE: -0.651 GC content %: 41.388
Atauschii_AET7Gv21082900.7 AET7Gv21082900.7	Low	No	1097	OG0016823		Get ORF Coding potential... Type: coding Potential: 0.218 Folding energies... MFEI: -26.299 AMFE: -0.635 GC content %: 41.386

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).