Atauschii AET7Gv21121900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv21121900 [ AET7Gv21121900] |
7D | 567881470 | 567890440 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv21121900.25 AET7Gv21121900.25 |
High | No | 830 | OG0081485 | Get ORF Coding potential... Type: noncoding Potential: -0.826 Folding energies... MFEI: -25.349 AMFE: -0.634 GC content %: 40.000 | |
| Atauschii_AET7Gv21121900.39 AET7Gv21121900.39 |
High | No | 1683 | OG0016826 | Get ORF Coding potential... Type: noncoding Potential: -0.544 Folding energies... MFEI: -25.859 AMFE: -0.637 GC content %: 40.582 | |
| Atauschii_AET7Gv21121900.44 AET7Gv21121900.44 |
High | No | 1402 | OG0016826 | Get ORF Coding potential... Type: noncoding Potential: -0.626 Folding energies... MFEI: -27.439 AMFE: -0.651 GC content %: 42.154 | |
| Atauschii_AET7Gv21121900.46 AET7Gv21121900.46 |
High | No | 481 | OG0016826 | Get ORF Coding potential... Type: noncoding Potential: -0.929 Folding energies... MFEI: -22.412 AMFE: -0.586 GC content %: 38.254 | |
| Atauschii_AET7Gv21121900.49 AET7Gv21121900.49 |
High | No | 759 | OG0026364 | Get ORF Coding potential... Type: noncoding Potential: -0.637 Folding energies... MFEI: -25.652 AMFE: -0.583 GC content %: 44.005 | |
| Atauschii_AET7Gv21121900.50 AET7Gv21121900.50 |
High | No | 533 | OG0026364 | Get ORF Coding potential... Type: noncoding Potential: -0.510 Folding energies... MFEI: -25.610 AMFE: -0.586 GC content %: 43.715 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
