Atauschii AET7Gv21132200
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv21132200 [ AET7Gv21132200] |
7D | 570875415 | 570879963 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv21132200.1 AET7Gv21132200.1 |
Low | No | 1939 | OG0002426 | Get ORF Coding potential... Type: noncoding Potential: -0.336 Folding energies... MFEI: -28.597 AMFE: -0.629 GC content %: 45.487 | |
| Atauschii_AET7Gv21132200.10 AET7Gv21132200.10 |
Low | No | 2565 | OG0002426 | Get ORF Coding potential... Type: noncoding Potential: -0.264 Folding energies... MFEI: -27.637 AMFE: -0.630 GC content %: 43.899 | |
| Atauschii_AET7Gv21132200.11 AET7Gv21132200.11 |
Low | No | 1867 | OG0002426 | Get ORF Coding potential... Type: noncoding Potential: -0.359 Folding energies... MFEI: -28.875 AMFE: -0.621 GC content %: 46.492 | |
| Atauschii_AET7Gv21132200.12 AET7Gv21132200.12 |
High | No | 258 | OG0081502 | Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -31.434 AMFE: -0.477 GC content %: 65.891 | |
| Atauschii_AET7Gv21132200.2 AET7Gv21132200.2 |
Low | No | 2609 | OG0002426 | Get ORF Coding potential... Type: noncoding Potential: -0.265 Folding energies... MFEI: -27.409 AMFE: -0.636 GC content %: 43.120 | |
| Atauschii_AET7Gv21132200.3 AET7Gv21132200.3 |
Low | No | 1541 | OG0002426 | Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -29.578 AMFE: -0.634 GC content %: 46.658 | |
| Atauschii_AET7Gv21132200.4 AET7Gv21132200.4 |
Low | No | 3230 | OG0002426 | Get ORF Coding potential... Type: noncoding Potential: -0.285 Folding energies... MFEI: -27.814 AMFE: -0.649 GC content %: 42.879 | |
| Atauschii_AET7Gv21132200.5 AET7Gv21132200.5 |
Low | No | 2560 | OG0002426 | Get ORF Coding potential... Type: noncoding Potential: -0.356 Folding energies... MFEI: -28.844 AMFE: -0.647 GC content %: 44.609 | |
| Atauschii_AET7Gv21132200.6 AET7Gv21132200.6 |
Low | No | 1130 | OG0002426 | Get ORF Coding potential... Type: noncoding Potential: -0.333 Folding energies... MFEI: -30.903 AMFE: -0.580 GC content %: 53.274 | |
| Atauschii_AET7Gv21132200.8 AET7Gv21132200.8 |
Low | No | 1728 | OG0002426 | Get ORF Coding potential... Type: noncoding Potential: -0.389 Folding energies... MFEI: -30.584 AMFE: -0.633 GC content %: 48.322 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv21132200.3 | SwissProt | 2021-04-01 | Q84VG1 | 1.88e-11 |
| Atauschii_AET7Gv21132200.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET7Gv21132200.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET7Gv21132200.4 | SwissProt | 2021-04-01 | Q8LE58 | 3.62e-12 |
| Atauschii_AET7Gv21132200.1 | SwissProt | 2021-04-01 | Q8LE58 | 3.74e-12 |
| Atauschii_AET7Gv21132200.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET7Gv21132200.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET7Gv21132200.5 | SwissProt | 2021-04-01 | Q8LE58 | 5.24e-12 |
| Atauschii_AET7Gv21132200.10 | SwissProt | 2021-04-01 | Q8LE58 | 2.78e-12 |
| Atauschii_AET7Gv21132200.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
