Atauschii AET7Gv21167300
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv21167300 [ AET7Gv21167300] |
7D | 582930075 | 582936986 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv21167300.1 AET7Gv21167300.1 |
High | No | 2297 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -34.558 AMFE: -0.669 GC content %: 51.676 | |
| Atauschii_AET7Gv21167300.10 AET7Gv21167300.10 |
High | No | 2568 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.165 Folding energies... MFEI: -33.699 AMFE: -0.693 GC content %: 48.598 | |
| Atauschii_AET7Gv21167300.11 AET7Gv21167300.11 |
Low | No | 1646 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -0.986 Folding energies... MFEI: -36.282 AMFE: -0.666 GC content %: 54.496 | |
| Atauschii_AET7Gv21167300.12 AET7Gv21167300.12 |
High | No | 2520 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -33.504 AMFE: -0.688 GC content %: 48.690 | |
| Atauschii_AET7Gv21167300.13 AET7Gv21167300.13 |
High | No | 2515 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -33.547 AMFE: -0.689 GC content %: 48.708 | |
| Atauschii_AET7Gv21167300.14 AET7Gv21167300.14 |
Low | No | 2765 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.171 Folding energies... MFEI: -31.526 AMFE: -0.673 GC content %: 46.835 | |
| Atauschii_AET7Gv21167300.15 AET7Gv21167300.15 |
Low | No | 1852 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.114 Folding energies... MFEI: -35.340 AMFE: -0.673 GC content %: 52.484 | |
| Atauschii_AET7Gv21167300.16 AET7Gv21167300.16 |
Low | No | 1546 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.082 Folding energies... MFEI: -36.365 AMFE: -0.661 GC content %: 54.981 | |
| Atauschii_AET7Gv21167300.17 AET7Gv21167300.17 |
Low | No | 1501 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -36.449 AMFE: -0.656 GC content %: 55.563 | |
| Atauschii_AET7Gv21167300.18 AET7Gv21167300.18 |
High | No | 1085 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.342 Folding energies... MFEI: -33.272 AMFE: -0.660 GC content %: 50.415 | |
| Atauschii_AET7Gv21167300.19 AET7Gv21167300.19 |
High | No | 989 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -29.616 AMFE: -0.654 GC content %: 45.298 | |
| Atauschii_AET7Gv21167300.2 AET7Gv21167300.2 |
High | No | 2557 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -34.020 AMFE: -0.677 GC content %: 50.215 | |
| Atauschii_AET7Gv21167300.20 AET7Gv21167300.20 |
High | No | 698 | OG0081552 | Get ORF Coding potential... Type: noncoding Potential: -1.388 Folding energies... MFEI: -20.501 AMFE: -0.604 GC content %: 33.954 | |
| Atauschii_AET7Gv21167300.21 AET7Gv21167300.21 |
High | No | 881 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.004 Folding energies... MFEI: -25.539 AMFE: -0.623 GC content %: 40.976 | |
| Atauschii_AET7Gv21167300.22 AET7Gv21167300.22 |
High | No | 1264 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -25.665 AMFE: -0.648 GC content %: 39.636 | |
| Atauschii_AET7Gv21167300.23 AET7Gv21167300.23 |
High | No | 652 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -28.113 AMFE: -0.639 GC content %: 44.018 | |
| Atauschii_AET7Gv21167300.24 AET7Gv21167300.24 |
High | No | 834 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -26.571 AMFE: -0.637 GC content %: 41.727 | |
| Atauschii_AET7Gv21167300.25 AET7Gv21167300.25 |
High | No | 686 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -0.948 Folding energies... MFEI: -25.743 AMFE: -0.609 GC content %: 42.274 | |
| Atauschii_AET7Gv21167300.26 AET7Gv21167300.26 |
High | No | 1418 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -24.055 AMFE: -0.665 GC content %: 36.178 | |
| Atauschii_AET7Gv21167300.3 AET7Gv21167300.3 |
Low | No | 1774 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.107 Folding energies... MFEI: -36.680 AMFE: -0.661 GC content %: 55.524 | |
| Atauschii_AET7Gv21167300.4 AET7Gv21167300.4 |
Low | No | 1292 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.045 Folding energies... MFEI: -38.003 AMFE: -0.644 GC content %: 58.978 | |
| Atauschii_AET7Gv21167300.5 AET7Gv21167300.5 |
Low | No | 1052 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -0.998 Folding energies... MFEI: -39.221 AMFE: -0.646 GC content %: 60.741 | |
| Atauschii_AET7Gv21167300.6 AET7Gv21167300.6 |
Low | No | 1527 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.079 Folding energies... MFEI: -38.317 AMFE: -0.657 GC content %: 58.284 | |
| Atauschii_AET7Gv21167300.7 AET7Gv21167300.7 |
Low | No | 1629 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.005 Folding energies... MFEI: -37.422 AMFE: -0.668 GC content %: 56.047 | |
| Atauschii_AET7Gv21167300.8 AET7Gv21167300.8 |
Low | No | 1538 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -38.030 AMFE: -0.682 GC content %: 55.787 | |
| Atauschii_AET7Gv21167300.9 AET7Gv21167300.9 |
Low | No | 1858 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.025 Folding energies... MFEI: -35.129 AMFE: -0.674 GC content %: 52.099 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv21167300.8 | SwissProt | 2021-04-01 | Q9FLT9 | 7.0e-4 |
| Atauschii_AET7Gv21167300.3 | SwissProt | 2021-04-01 | Q9FLT9 | 8.45e-4 |
| Atauschii_AET7Gv21167300.9 | SwissProt | 2021-04-01 | Q9FLT9 | 3.16e-4 |
| Atauschii_AET7Gv21167300.4 | SwissProt | 2021-04-01 | Q9FLT9 | 5.48e-4 |
| Atauschii_AET7Gv21167300.11 | SwissProt | 2021-04-01 | Q9FLT9 | 7.67e-4 |
| Atauschii_AET7Gv21167300.14 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET7Gv21167300.5 | SwissProt | 2021-04-01 | Q9FLT9 | 3.99e-4 |
| Atauschii_AET7Gv21167300.15 | SwissProt | 2021-04-01 | Q9FLT9 | 8.96e-4 |
| Atauschii_AET7Gv21167300.16 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET7Gv21167300.6 | SwissProt | 2021-04-01 | Q9FLT9 | 6.93e-4 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
