Atauschii AET7Gv21204800
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv21204800 [ AET7Gv21204800] |
7D | 597727527 | 597730876 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv21204800.1 AET7Gv21204800.1 |
Low | No | 1903 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -0.359 Folding energies... MFEI: -27.438 AMFE: -0.625 GC content %: 43.931 | |
| Atauschii_AET7Gv21204800.10 AET7Gv21204800.10 |
Low | No | 712 | OG0081611 | Get ORF Coding potential... Type: noncoding Potential: -0.128 Folding energies... MFEI: -31.053 AMFE: -0.574 GC content %: 54.073 | |
| Atauschii_AET7Gv21204800.11 AET7Gv21204800.11 |
High | No | 1911 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -26.899 AMFE: -0.635 GC content %: 42.386 | |
| Atauschii_AET7Gv21204800.12 AET7Gv21204800.12 |
Low | No | 2023 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -0.384 Folding energies... MFEI: -27.120 AMFE: -0.633 GC content %: 42.857 | |
| Atauschii_AET7Gv21204800.13 AET7Gv21204800.13 |
High | No | 1794 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -27.009 AMFE: -0.626 GC content %: 43.144 | |
| Atauschii_AET7Gv21204800.14 AET7Gv21204800.14 |
High | No | 1751 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -27.090 AMFE: -0.634 GC content %: 42.718 | |
| Atauschii_AET7Gv21204800.15 AET7Gv21204800.15 |
Low | No | 1975 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -0.196 Folding energies... MFEI: -27.663 AMFE: -0.629 GC content %: 44.000 | |
| Atauschii_AET7Gv21204800.16 AET7Gv21204800.16 |
Low | No | 1884 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -0.358 Folding energies... MFEI: -27.534 AMFE: -0.639 GC content %: 43.100 | |
| Atauschii_AET7Gv21204800.17 AET7Gv21204800.17 |
Low | No | 244 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -0.089 Folding energies... MFEI: -33.197 AMFE: -0.596 GC content %: 55.738 | |
| Atauschii_AET7Gv21204800.18 AET7Gv21204800.18 |
Low | No | 1868 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -1.108 Folding energies... MFEI: -27.170 AMFE: -0.631 GC content %: 43.041 | |
| Atauschii_AET7Gv21204800.19 AET7Gv21204800.19 |
High | No | 1815 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -1.106 Folding energies... MFEI: -26.851 AMFE: -0.630 GC content %: 42.645 | |
| Atauschii_AET7Gv21204800.2 AET7Gv21204800.2 |
High | No | 1888 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -27.740 AMFE: -0.630 GC content %: 44.015 | |
| Atauschii_AET7Gv21204800.20 AET7Gv21204800.20 |
Low | No | 1264 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -28.152 AMFE: -0.646 GC content %: 43.592 | |
| Atauschii_AET7Gv21204800.21 AET7Gv21204800.21 |
High | No | 1745 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -27.085 AMFE: -0.642 GC content %: 42.178 | |
| Atauschii_AET7Gv21204800.22 AET7Gv21204800.22 |
High | No | 1845 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -26.360 AMFE: -0.621 GC content %: 42.439 | |
| Atauschii_AET7Gv21204800.3 AET7Gv21204800.3 |
Low | No | 1890 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -0.358 Folding energies... MFEI: -27.330 AMFE: -0.627 GC content %: 43.598 | |
| Atauschii_AET7Gv21204800.4 AET7Gv21204800.4 |
Low | No | 1999 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -1.057 Folding energies... MFEI: -27.921 AMFE: -0.631 GC content %: 44.272 | |
| Atauschii_AET7Gv21204800.5 AET7Gv21204800.5 |
High | No | 1924 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -1.053 Folding energies... MFEI: -27.642 AMFE: -0.628 GC content %: 44.023 | |
| Atauschii_AET7Gv21204800.6 AET7Gv21204800.6 |
Low | No | 1965 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -0.361 Folding energies... MFEI: -27.478 AMFE: -0.628 GC content %: 43.766 | |
| Atauschii_AET7Gv21204800.7 AET7Gv21204800.7 |
Low | No | 2036 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -0.200 Folding energies... MFEI: -27.777 AMFE: -0.626 GC content %: 44.401 | |
| Atauschii_AET7Gv21204800.8 AET7Gv21204800.8 |
Low | No | 255 | OG0081612 | Get ORF Coding potential... Type: noncoding Potential: -0.060 Folding energies... MFEI: -32.667 AMFE: -0.567 GC content %: 57.647 | |
| Atauschii_AET7Gv21204800.9 AET7Gv21204800.9 |
Low | No | 1383 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -0.491 Folding energies... MFEI: -27.667 AMFE: -0.634 GC content %: 43.673 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv21204800.10 | SwissProt | 2021-04-01 | Q6M9M7 | 6.41e-13 |
| Atauschii_AET7Gv21204800.8 | SwissProt | 2021-04-01 | Q6M9M7 | 1.54e-15 |
| Atauschii_AET7Gv21204800.20 | SwissProt | 2021-04-01 | Q6M9M7 | 4.57e-8 |
| Atauschii_AET7Gv21204800.12 | SwissProt | 2021-04-01 | Q6M9M7 | 1.72e-11 |
| Atauschii_AET7Gv21204800.9 | SwissProt | 2021-04-01 | Q6M9M7 | 5.43e-12 |
| Atauschii_AET7Gv21204800.3 | SwissProt | 2021-04-01 | Q6M9M7 | 1.16e-11 |
| Atauschii_AET7Gv21204800.15 | SwissProt | 2021-04-01 | Q6M9M7 | 1.54e-11 |
| Atauschii_AET7Gv21204800.4 | SwissProt | 2021-04-01 | Q6M9M7 | 4.62e-8 |
| Atauschii_AET7Gv21204800.16 | SwissProt | 2021-04-01 | Q6M9M7 | 1.47e-11 |
| Atauschii_AET7Gv21204800.6 | SwissProt | 2021-04-01 | Q6M9M7 | 1.25e-11 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
