GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET7Gv21225400 [ AET7Gv21225400]	7D	603895539	603901480	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET7Gv21225400.3 AET7Gv21225400.3	Low	No	1417	OG0081633		Get ORF Coding potential... Type: noncoding Potential: -0.246 Folding energies... MFEI: -25.399 AMFE: -0.615 GC content %: 41.284
Atauschii_AET7Gv21225400.6 AET7Gv21225400.6	High	No	511	OG0081634		Get ORF Coding potential... Type: noncoding Potential: -0.858 Folding energies... MFEI: -23.620 AMFE: -0.539 GC content %: 43.836
Atauschii_AET7Gv21225400.8 AET7Gv21225400.8	High	No	379	OG0081635		Get ORF Coding potential... Type: noncoding Potential: -0.567 Folding energies... MFEI: -41.847 AMFE: -0.608 GC content %: 68.865

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET7Gv21225400.3	SwissProt	2021-04-01	Q8S8Q6	9.67e-17

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).