Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET7Gv21235900 [ AET7Gv21235900] |
7D | 606539759 | 606547739 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET7Gv21235900.1 AET7Gv21235900.1 |
Low | Yes | 4293 | OG0026378 | Get ORF Coding potential... Type: noncoding Potential: -0.035 Folding energies... MFEI: -30.396 AMFE: -0.668 GC content %: 45.493 | |
Atauschii_AET7Gv21235900.11 AET7Gv21235900.11 |
Low | Yes | 3013 | OG0026378 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -28.619 AMFE: -0.701 GC content %: 40.823 | |
Atauschii_AET7Gv21235900.19 AET7Gv21235900.19 |
Low | No | 288 | OG0081645 | Get ORF Coding potential... Type: noncoding Potential: -0.756 Folding energies... MFEI: -44.479 AMFE: -0.704 GC content %: 63.194 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET7Gv21235900.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; LTR/Copia | |
Atauschii_AET7Gv21235900.11 | SwissProt | 2021-04-01 | P82715 | 3.28e-6 |
Atauschii_AET7Gv21235900.19 | SwissProt | 2021-04-01 | P82715 | 1.31e-8 |
Atauschii_AET7Gv21235900.1 | Rfam | 14.6 | MIR1122 | 3.7e-23 |
Atauschii_AET7Gv21235900.11 | Rfam | 14.6 | MIR1122 | 2.6e-23 |
Atauschii_AET7Gv21235900.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
Atauschii_AET7Gv21235900.1 | SwissProt | 2021-04-01 | Q7F0J0 | 3.51e-10 |