Atauschii AET7Gv21250600
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv21250600 [ AET7Gv21250600] |
7D | 611014878 | 611191827 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv21250600.13 AET7Gv21250600.13 |
Low | No | 968 | OG0081660 | Get ORF Coding potential... Type: noncoding Potential: -0.297 Folding energies... MFEI: -26.002 AMFE: -0.601 GC content %: 43.285 | |
| Atauschii_AET7Gv21250600.23 AET7Gv21250600.23 |
High | No | 524 | OG0081661 | Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -24.256 AMFE: -0.605 GC content %: 40.076 | |
| Atauschii_AET7Gv21250600.24 AET7Gv21250600.24 |
Low | No | 313 | OG0002978 | Get ORF Coding potential... Type: noncoding Potential: -0.955 Folding energies... MFEI: -22.971 AMFE: -0.575 GC content %: 39.936 | |
| Atauschii_AET7Gv21250600.25 AET7Gv21250600.25 |
Low | No | 560 | OG0002978 | Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -27.375 AMFE: -0.681 GC content %: 40.179 | |
| Atauschii_AET7Gv21250600.38 AET7Gv21250600.38 |
Low | No | 558 | OG0081662 | Get ORF Coding potential... Type: noncoding Potential: -0.241 Folding energies... MFEI: -24.570 AMFE: -0.601 GC content %: 40.860 | |
| Atauschii_AET7Gv21250600.42 AET7Gv21250600.42 |
Low | No | 600 | OG0002978 | Get ORF Coding potential... Type: noncoding Potential: -0.259 Folding energies... MFEI: -25.767 AMFE: -0.626 GC content %: 41.167 | |
| Atauschii_AET7Gv21250600.43 AET7Gv21250600.43 |
Low | No | 532 | OG0002978 | Get ORF Coding potential... Type: noncoding Potential: -0.085 Folding energies... MFEI: -24.624 AMFE: -0.601 GC content %: 40.977 | |
| Atauschii_AET7Gv21250600.45 AET7Gv21250600.45 |
Low | No | 595 | OG0002978 | Get ORF Coding potential... Type: noncoding Potential: -0.257 Folding energies... MFEI: -25.866 AMFE: -0.633 GC content %: 40.840 | |
| Atauschii_AET7Gv21250600.46 AET7Gv21250600.46 |
Low | No | 382 | OG0002978 | Get ORF Coding potential... Type: noncoding Potential: -0.895 Folding energies... MFEI: -29.634 AMFE: -0.651 GC content %: 45.550 | |
| Atauschii_AET7Gv21250600.47 AET7Gv21250600.47 |
Low | No | 268 | OG0002978 | Get ORF Coding potential... Type: noncoding Potential: -1.082 Folding energies... MFEI: -20.746 AMFE: -0.530 GC content %: 39.179 | |
| Atauschii_AET7Gv21250600.5 AET7Gv21250600.5 |
High | No | 773 | OG0026384 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -24.204 AMFE: -0.628 GC content %: 38.551 | |
| Atauschii_AET7Gv21250600.6 AET7Gv21250600.6 |
Low | No | 538 | OG0026384 | Get ORF Coding potential... Type: noncoding Potential: -1.082 Folding energies... MFEI: -21.227 AMFE: -0.557 GC content %: 38.104 | |
| Atauschii_AET7Gv21250600.7 AET7Gv21250600.7 |
Low | No | 487 | OG0002978 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -22.382 AMFE: -0.571 GC content %: 39.220 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv21250600.46 | SwissProt | 2021-04-01 | Q5RBU7 | 3.8e-9 |
| Atauschii_AET7Gv21250600.25 | SwissProt | 2021-04-01 | Q9EPB1 | 4.75e-7 |
| Atauschii_AET7Gv21250600.47 | SwissProt | 2021-04-01 | Q9EPB1 | 1.86e-4 |
| Atauschii_AET7Gv21250600.38 | SwissProt | 2021-04-01 | Q9EPB1 | 5.11e-12 |
| Atauschii_AET7Gv21250600.6 | SwissProt | 2021-04-01 | Q9EPB1 | 1.43e-7 |
| Atauschii_AET7Gv21250600.42 | SwissProt | 2021-04-01 | Q9UHL4 | 8.62e-12 |
| Atauschii_AET7Gv21250600.7 | SwissProt | 2021-04-01 | Q9EPB1 | 4.46e-8 |
| Atauschii_AET7Gv21250600.43 | SwissProt | 2021-04-01 | Q9UHL4 | 1.09e-16 |
| Atauschii_AET7Gv21250600.13 | SwissProt | 2021-04-01 | P34610 | 5.99e-14 |
| Atauschii_AET7Gv21250600.45 | SwissProt | 2021-04-01 | Q9UHL4 | 9.44e-12 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
