GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET7Gv21256400 [ AET7Gv21256400]	7D	612540348	612549026	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET7Gv21256400.18 AET7Gv21256400.18	High	No	434	OG0081670		Get ORF Coding potential... Type: noncoding Potential: -0.887 Folding energies... MFEI: -44.055 AMFE: -0.644 GC content %: 68.433
Atauschii_AET7Gv21256400.19 AET7Gv21256400.19	High	No	490	OG0081671		Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -37.041 AMFE: -0.565 GC content %: 65.510

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).