GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET7Gv21269400 [ AET7Gv21269400]	7D	616836798	616837774	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET7Gv21269400.1 AET7Gv21269400.1	High	No	977	OG0081700		Get ORF Coding potential... Type: noncoding Potential: -0.874 Folding energies... MFEI: -30.020 AMFE: -0.681 GC content %: 44.115
Atauschii_AET7Gv21269400.2 AET7Gv21269400.2	High	No	232	OG0081701		Get ORF Coding potential... Type: noncoding Potential: -0.905 Folding energies... MFEI: -39.612 AMFE: -0.766 GC content %: 51.724

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).