Atauschii AET7Gv21327600

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Atauschii_AET7Gv21327600
[ AET7Gv21327600]
7D 633583474 633599684 v4 Aegilops tauschii (Ensembl Plants 51)
Coding?
Yes


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Atauschii_AET7Gv21327600.2
AET7Gv21327600.2
High No 903 OG0010250
Coding potential...
Type: noncoding Potential: -0.328
Folding energies...
MFEI: -35.537 AMFE: -0.658
GC content
%: 54.042
Atauschii_AET7Gv21327600.4
AET7Gv21327600.4
High No 672 OG0010250
Coding potential...
Type: noncoding Potential: -0.862
Folding energies...
MFEI: -29.077 AMFE: -0.618
GC content
%: 47.024
Atauschii_AET7Gv21327600.6
AET7Gv21327600.6
High No 481 OG0081780
Coding potential...
Type: noncoding Potential: -0.765
Folding energies...
MFEI: -31.393 AMFE: -0.686
GC content
%: 45.738
Atauschii_AET7Gv21327600.7
AET7Gv21327600.7
High No 868 OG0010250
Coding potential...
Type: noncoding Potential: -0.512
Folding energies...
MFEI: -32.028 AMFE: -0.644
GC content
%: 49.770
Atauschii_AET7Gv21327600.8
AET7Gv21327600.8
High No 944 OG0010250
Coding potential...
Type: noncoding Potential: -0.354
Folding energies...
MFEI: -33.114 AMFE: -0.632
GC content
%: 52.436


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Atauschii_AET7Gv21327600.png