GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET7Gv21327600 [ AET7Gv21327600]	7D	633583474	633599684	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET7Gv21327600.2 AET7Gv21327600.2	High	No	903	OG0010250		Get ORF Coding potential... Type: noncoding Potential: -0.328 Folding energies... MFEI: -35.537 AMFE: -0.658 GC content %: 54.042
Atauschii_AET7Gv21327600.4 AET7Gv21327600.4	High	No	672	OG0010250		Get ORF Coding potential... Type: noncoding Potential: -0.862 Folding energies... MFEI: -29.077 AMFE: -0.618 GC content %: 47.024
Atauschii_AET7Gv21327600.6 AET7Gv21327600.6	High	No	481	OG0081780		Get ORF Coding potential... Type: noncoding Potential: -0.765 Folding energies... MFEI: -31.393 AMFE: -0.686 GC content %: 45.738
Atauschii_AET7Gv21327600.7 AET7Gv21327600.7	High	No	868	OG0010250		Get ORF Coding potential... Type: noncoding Potential: -0.512 Folding energies... MFEI: -32.028 AMFE: -0.644 GC content %: 49.770
Atauschii_AET7Gv21327600.8 AET7Gv21327600.8	High	No	944	OG0010250		Get ORF Coding potential... Type: noncoding Potential: -0.354 Folding energies... MFEI: -33.114 AMFE: -0.632 GC content %: 52.436

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).