Atauschii AET7Gv21356100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv21356100 [ AET7Gv21356100] |
7D | 642855221 | 642861981 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv21356100.1 AET7Gv21356100.1 |
High | No | 1017 | OG0026410 | Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -34.651 AMFE: -0.635 GC content %: 54.572 | |
| Atauschii_AET7Gv21356100.17 AET7Gv21356100.17 |
Low | No | 873 | OG0081825 | Get ORF Coding potential... Type: coding Potential: 2.239 Folding energies... MFEI: -18.763 AMFE: -0.367 GC content %: 51.088 | |
| Atauschii_AET7Gv21356100.2 AET7Gv21356100.2 |
High | No | 988 | OG0026410 | Get ORF Coding potential... Type: noncoding Potential: -0.589 Folding energies... MFEI: -35.162 AMFE: -0.651 GC content %: 54.049 | |
| Atauschii_AET7Gv21356100.22 AET7Gv21356100.22 |
Low | No | 995 | OG0026411 | Get ORF Coding potential... Type: coding Potential: 2.554 Folding energies... MFEI: -20.553 AMFE: -0.403 GC content %: 50.955 | |
| Atauschii_AET7Gv21356100.26 AET7Gv21356100.26 |
Low | No | 932 | OG0026411 | Get ORF Coding potential... Type: coding Potential: 2.232 Folding energies... MFEI: -20.043 AMFE: -0.395 GC content %: 50.751 | |
| Atauschii_AET7Gv21356100.27 AET7Gv21356100.27 |
Low | No | 807 | OG0081826 | Get ORF Coding potential... Type: coding Potential: 2.091 Folding energies... MFEI: -16.989 AMFE: -0.334 GC content %: 50.805 | |
| Atauschii_AET7Gv21356100.7 AET7Gv21356100.7 |
Low | No | 1114 | OG0026412 | Get ORF Coding potential... Type: coding Potential: 2.770 Folding energies... MFEI: -22.101 AMFE: -0.431 GC content %: 51.257 | |
| Atauschii_AET7Gv21356100.8 AET7Gv21356100.8 |
Low | No | 1126 | OG0026412 | Get ORF Coding potential... Type: coding Potential: 2.776 Folding energies... MFEI: -22.274 AMFE: -0.435 GC content %: 51.243 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
